Factsheet for Bra039430.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001153.1-P	Field mustard	nucleus	77.78	26.99
AT3G05545.1	Thale cress	nucleus	72.92	24.71
Bra040540.1-P	Field mustard	nucleus	65.97	22.62
CDY27759	Canola	endoplasmic reticulum, vacuole	55.56	22.04
GSMUA_Achr2P02250_001	Banana	nucleus	44.44	21.55
KRH33887	Soybean	nucleus	59.03	19.72
KRG96789	Soybean	nucleus	56.94	19.66
KRH68500	Soybean	nucleus	56.25	19.42
KRG92902	Soybean	nucleus	59.03	19.36
VIT_14s0060g02280.t01	Wine grape	nucleus	56.25	19.15
PGSC0003DMT400063581	Potato	nucleus	54.86	18.5
Solyc01g099790.2.1	Tomato	nucleus	53.47	18.08
Bra013110.1-P	Field mustard	nucleus	36.11	17.57
Bra004436.1-P	Field mustard	nucleus	45.83	17.41
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	50.69	16.82
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	50.69	16.82
GSMUA_Achr5P27050_001	Banana	nucleus	47.22	16.35
Os05t0154600-01	Rice	nucleus	49.31	16.28
EES19051	Sorghum	nucleus	48.61	16.02
KXG32474	Sorghum	nucleus	47.22	14.88
Zm00001d040789_P001	Maize	nucleus	45.83	14.25
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	47.22	14.08
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	44.44	14.07
TraesCS1A01G095100.1	Wheat	cytosol	37.5	13.81
GSMUA_Achr8P06630_001	Banana	nucleus	49.31	13.32
HORVU1Hr1G022130.3	Barley	nucleus, plastid	50.0	13.26
Zm00001d037596_P001	Maize	nucleus	49.31	12.54
Bra039429.1-P	Field mustard	plastid	0.69	0.72

Protein Annotations

EnsemblPlants:Bra039430.1	EnsemblPlants:Bra039430.1-P	EnsemblPlantsGene:Bra039430	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639	PFscan:PS50089
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00025473A4	UniProt:M4FEA9	MapMan:19.2.2.1.5.3.3	:

Description

AT3G05545 (E=2e-071) | transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein

Coordinates

chrA05:-:23303455..23305048

Molecular Weight (calculated)

15688.1 Da

IEP (calculated)

4.524

GRAVY (calculated)

-0.393

Length

144 amino acids

Sequence
(BLAST)

001: MGLGNKLNKF NFGDTDLAHE GGAADGGDPR DEGDGFGSAA CSICLDTVAK DGDRAWANLQ CGHLFHLDCI GSAFNAKGVM QCPNCRKIEK GQWLYANGCR
101: SHPEFNVEDW FHEDEFFDIG GYSEVAFGVH WCPFGSSARL PSFE

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.