Factsheet for Solyc01g099790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063581	Potato	nucleus	93.19	92.97
VIT_14s0060g02280.t01	Wine grape	nucleus	73.24	73.76
KRH33887	Soybean	nucleus	64.79	64.04
KRG96789	Soybean	nucleus	62.44	63.79
KRH68500	Soybean	nucleus	61.97	63.31
KRG92902	Soybean	nucleus	62.68	60.82
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	18.08	53.47
CDY05177	Canola	nucleus	45.54	46.97
AT3G05545.1	Thale cress	nucleus	46.71	46.82
CDY27759	Canola	endoplasmic reticulum, vacuole	39.67	46.56
Bra001153.1-P	Field mustard	nucleus	45.31	46.51
CDX74141	Canola	nucleus	44.84	46.02
CDY40715	Canola	nucleus	44.84	46.02
CDY18820	Canola	nucleus	44.84	45.48
Bra039429.1-P	Field mustard	plastid	14.79	45.32
Bra040540.1-P	Field mustard	nucleus	44.37	45.0
GSMUA_Achr2P02250_001	Banana	nucleus	26.29	37.71
Os05t0154600-01	Rice	nucleus	36.85	36.01
GSMUA_Achr5P27050_001	Banana	nucleus	33.8	34.62
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	34.98	34.33
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	34.51	33.87
TraesCS1A01G095100.1	Wheat	cytosol	29.81	32.48
EES19051	Sorghum	nucleus	32.86	32.04
CDY27760	Canola	cytosol	5.87	30.49
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	32.39	30.33
GSMUA_Achr8P06630_001	Banana	nucleus	37.09	29.64
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	32.86	28.99
KXG32474	Sorghum	nucleus	29.34	27.35
HORVU1Hr1G022130.3	Barley	nucleus, plastid	34.74	27.26
Zm00001d040789_P001	Maize	nucleus	28.17	25.92
Zm00001d037596_P001	Maize	nucleus	33.1	24.91

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR001841	InterPro:IPR013083	UniProt:K4B113	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937
PANTHER:PTHR22937:SF37	SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g099790.2	EnsemblPlants:Solyc01g099790.2.1	UniParc:UPI0002768F6D
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:89934036..89941299

Molecular Weight (calculated)

45928.7 Da

IEP (calculated)

6.462

GRAVY (calculated)

-0.540

Length

426 amino acids

Sequence
(BLAST)

001: MGLNGVDLTD DGDGGGGDVG GGEDKASVVS CSICLEAVTD NGDRSWSKLQ CGHQFHLDCI GSAFNIKGQM QCPNCRKIEK GQWLYASGCR PLPDFNMEDW
101: AHDEDLYDLS YTEMSFGVHW CPFSGLTRLP ASFDEGELSS SAYHDLLGQH AIFADHTAVS SAAHPCPYIA YVGIHPSSSN SSGSINDGPN FNNHWTSPSV
201: PNEIPASYAF PGMDVHYHSW DHHSSFPMAS SRVGTADQSS VPSVTQRVAR TNADIPRPGS FVPPFLVGHG SAARAGSSVA SPMIPPYPGS VARARDRVQA
301: LQAYFQQPSN SPAVRTPVMS ATRRSNNHRG LAQVGPAASS SDQAGGFYFY PSSSSGRNFQ EAENPVSNRY HAWEREHLPA FPLSQVDRDP IWGPFHHTGV
401: GSDSGSRAGS FRPRHGSERM PSQNRS

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.