Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 99.08 | 99.08 |
| TraesCS1A01G095100.1 | Wheat | cytosol | 87.56 | 97.19 |
| Os05t0154600-01 | Rice | nucleus | 83.41 | 83.03 |
| EES19051 | Sorghum | nucleus | 78.34 | 77.8 |
| HORVU1Hr1G022130.3 | Barley | nucleus, plastid | 92.86 | 74.22 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 75.81 | 68.12 |
| Zm00001d037596_P001 | Maize | nucleus | 76.27 | 58.48 |
| Bra039430.1-P | Field mustard | cytosol, mitochondrion, nucleus | 16.82 | 50.69 |
| KRH68500 | Soybean | nucleus | 35.94 | 37.41 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 25.35 | 37.04 |
| KRG96789 | Soybean | nucleus | 35.48 | 36.93 |
| KRH33887 | Soybean | nucleus | 36.18 | 36.43 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 34.79 | 36.3 |
| VIT_14s0060g02280.t01 | Wine grape | nucleus | 34.79 | 35.7 |
| KRG92902 | Soybean | nucleus | 35.94 | 35.54 |
| AT2G47700.1 | Thale cress | nucleus | 29.03 | 35.2 |
| PGSC0003DMT400063581 | Potato | nucleus | 34.33 | 34.89 |
| Solyc01g099790.2.1 | Tomato | nucleus | 33.87 | 34.51 |
| VIT_07s0005g00420.t01 | Wine grape | nucleus | 31.34 | 34.26 |
| Bra040540.1-P | Field mustard | nucleus | 32.95 | 34.05 |
| CDY18820 | Canola | nucleus | 32.72 | 33.81 |
| CDY40715 | Canola | nucleus | 31.57 | 33.01 |
| Bra001153.1-P | Field mustard | nucleus | 31.57 | 33.01 |
| CDX74141 | Canola | nucleus | 31.57 | 33.01 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 40.32 | 32.83 |
| AT3G05545.1 | Thale cress | nucleus | 32.03 | 32.71 |
| CDY53013 | Canola | nucleus | 27.65 | 32.61 |
| CDY05177 | Canola | nucleus | 30.88 | 32.45 |
| Bra004436.1-P | Field mustard | nucleus | 27.65 | 31.66 |
| CDX80127 | Canola | nucleus | 27.65 | 31.66 |
| CDY27759 | Canola | endoplasmic reticulum, vacuole | 25.58 | 30.58 |
| CDY27760 | Canola | cytosol | 5.07 | 26.83 |
| CDY64147 | Canola | cytosol | 9.68 | 26.75 |
| TraesCS7B01G163800.1 | Wheat | cytosol | 26.04 | 26.28 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 11.52 | 25.38 |
| CDX89655 | Canola | nucleus | 14.75 | 21.92 |
| CDX93159 | Canola | nucleus | 13.82 | 20.2 |
| AT4G13490.1 | Thale cress | cytosol, nucleus, plastid | 10.37 | 19.91 |
| Bra013110.1-P | Field mustard | nucleus | 13.36 | 19.59 |
| Bra039429.1-P | Field mustard | plastid | 6.22 | 19.42 |
| CDY31489 | Canola | cytosol | 14.06 | 17.68 |
| AT2G15260.1 | Thale cress | mitochondrion, nucleus | 13.36 | 16.02 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G123100.1 | EnsemblPlantsGene:TraesCS1B01G123100 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16448 | MapMan:19.2.2.1.5.3.3 | : | : |
Description
No Description!
Coordinates
chr1B:-:148471588..148478263
Molecular Weight (calculated)
47559.7 Da
IEP (calculated)
6.246
GRAVY (calculated)
-0.696
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGAEPREE EPLEAEEGAG GKEEKAAVSC SICLDAVVAA SAERSTARLQ CGHEFHLDCI GSAFNAKGVM QCPNCRKIEK GNWLYANGSR PSHDINMDEW
101: AHEEDLYDVS YSEMPFRFHW CPFGRLAQLP SFFEEGESPP PVTFHDFMGQ HVFPENLSVS AAPGTHPCPY VAYLHPLPSL ASSSSSHVPE RTMDGSAYHD
201: HWNHLAGPSD GRPLQTVQPT DFHHNHWAHL PHSYVQSNSN NGVTEQPGVP FGSMRAARVD GDSQRRGSVV SPSYFSNGSG SRSRAPNVPP LVPQFMRAHG
301: NINEQYTQSS SSSLFAGAHR SGGMRPAPPP PQPENPTFCL FPPGSSGHSS MDTDEAGGSR FYAWERDRFA PYPLMPVDCE TSWWSSQQSH GASESTPAPA
401: PRRLFGQWIG LGRSSPENRS PEGSSYRQMH SPRM
101: AHEEDLYDVS YSEMPFRFHW CPFGRLAQLP SFFEEGESPP PVTFHDFMGQ HVFPENLSVS AAPGTHPCPY VAYLHPLPSL ASSSSSHVPE RTMDGSAYHD
201: HWNHLAGPSD GRPLQTVQPT DFHHNHWAHL PHSYVQSNSN NGVTEQPGVP FGSMRAARVD GDSQRRGSVV SPSYFSNGSG SRSRAPNVPP LVPQFMRAHG
301: NINEQYTQSS SSSLFAGAHR SGGMRPAPPP PQPENPTFCL FPPGSSGHSS MDTDEAGGSR FYAWERDRFA PYPLMPVDCE TSWWSSQQSH GASESTPAPA
401: PRRLFGQWIG LGRSSPENRS PEGSSYRQMH SPRM
001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.