CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93159	Canola	nucleus	73.29	72.05
Bra013110.1-P	Field mustard	nucleus	67.81	66.89
CDY27760	Canola	cytosol	6.51	23.17
CDY64147	Canola	cytosol	11.99	22.29
CDY05177	Canola	nucleus	27.74	19.61
CDY40715	Canola	nucleus	27.74	19.52
CDX74141	Canola	nucleus	27.4	19.28
CDY18820	Canola	nucleus	27.4	19.05
GSMUA_Achr2P02250_001	Banana	nucleus	19.18	18.86
AT2G15260.1	Thale cress	mitochondrion, nucleus	20.89	16.85
CDY27759	Canola	endoplasmic reticulum, vacuole	20.21	16.25
CDX85292	Canola	cytosol, golgi, peroxisome	10.27	15.23
CDY53013	Canola	nucleus	19.18	15.22
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	21.92	14.75
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	21.58	14.52
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	22.26	14.29
CDX80127	Canola	nucleus	18.49	14.25
Os05t0154600-01	Rice	nucleus	21.23	14.22
GSMUA_Achr5P27050_001	Banana	nucleus	20.21	14.18
KXG32474	Sorghum	nucleus	21.92	14.0
EES19051	Sorghum	nucleus	20.55	13.73
Zm00001d040789_P001	Maize	nucleus	21.23	13.39
TraesCS1A01G095100.1	Wheat	cytosol	17.47	13.04
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	21.23	12.84
GSMUA_Achr8P06630_001	Banana	nucleus	22.95	12.57
HORVU1Hr1G022130.3	Barley	nucleus, plastid	22.26	11.97
CDY31489	Canola	cytosol	13.01	11.01
Zm00001d037596_P001	Maize	nucleus	20.21	10.42

Protein Annotations

EnsemblPlants:CDX89655	EnsemblPlantsGene:GSBRNA2T00150038001	Gene3D:3.30.40.10	GO:A0A078DKF9	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639	PFscan:PS50089
ProteinID:CDX89655	ProteinID:CDX89655.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EF0153
MapMan:19.2.2.1.5.3.3	:	:	:	:	:

Description

BnaC03g45690D

Coordinates

chrLK031860:-:527169..529522

Molecular Weight (calculated)

31295.0 Da

IEP (calculated)

5.100

GRAVY (calculated)

-0.580

Length

292 amino acids

Sequence
(BLAST)

001: MNLGSNNNNE RKQFAFDLNV KPVEDDNSDF PENSDLCTIC LEPLVNTRDD RRTFVTLRCG HKFHLDCIGS AFNAKGFMQC PNCMQIEPGQ WRYATNPPIP
101: NISEGDWLTE EEDDDANSDR ATQSSLAASL GPYFNSHRIT AIEEVQQRAP PSRQLTFSRV LEPGVMAGRH YLAHPSFHHN PSVRNAPLFP PYPNTGTLQV
201: NGIPAALLGD SSAPVMFSSG REQVAGGISH SWTSFTYETP RGFPSSSRGG GTSVNDGDGI GVSSSNGGTG GGGNGDCNGI SGGNNLSGCR PA

Best Arabidopsis Sequence Match ( AT2G15260.1 )
(BLAST)

001: MARTIKYRLL IEFHRVNKQV ERIYSKSSGS SNVNEGKRFA FDLNVEPVDE TLDLNVEPVD EENRDALNPV DEENHDSMNH VAKQNHDSSN HVDQEIRDSQ
101: NLIDEENHDS PKDSDYLGDL DLCSICRGAL VNENDVQRTL VTLKCVHKFH LDCIGSAYNA KGFMECPNCR NIEPGHWQFS DGTHFNPNGM IANNEEEEED
201: NDPGSFSQMI VKSEVCPFGC LGQRYPFDPL GRSDISMINA PMNLSCPSTS TVQLNPSDVW ESTQPFLSSR HHLMVEDEIY RMIYGDRIEM GERSGNHRGR
301: ESNGNGDNGG SSTFGGNGNG NGINATVLCS SRTGSSNYFS TSQVKVTIQR LENVHGLIGI SS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SHV0]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.