Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- golgi 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47700.1 | CDX73173 | AT1G75440.1 | 21798944 |
| AT2G47700.1 | CDY47522 | AT1G75440.1 | 21798944 |
| AT2G47700.1 | CDY39571 | AT3G48240.1 | 21798944 |
| AT2G47700.1 | CDY48161 | AT3G48240.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004436.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY53013 | Canola | nucleus | 85.75 | 88.32 |
| AT2G47700.1 | Thale cress | nucleus | 68.07 | 72.07 |
| CDY64147 | Canola | cytosol | 20.32 | 49.04 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 22.43 | 43.15 |
| VIT_07s0005g00420.t01 | Wine grape | nucleus | 33.25 | 31.74 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 22.43 | 28.62 |
| CDY18820 | Canola | nucleus | 30.87 | 27.86 |
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 31.66 | 27.65 |
| TraesCS1B01G123100.1 | Wheat | cytosol, nucleus, plasma membrane | 31.66 | 27.65 |
| EES19051 | Sorghum | nucleus | 31.66 | 27.46 |
| CDX74141 | Canola | nucleus | 29.82 | 27.23 |
| Os05t0154600-01 | Rice | nucleus | 31.13 | 27.06 |
| CDY40715 | Canola | nucleus | 29.55 | 26.99 |
| CDY27760 | Canola | cytosol | 5.8 | 26.83 |
| CDY31489 | Canola | cytosol | 24.01 | 26.38 |
| CDY05177 | Canola | nucleus | 28.5 | 26.15 |
| TraesCS1A01G095100.1 | Wheat | cytosol | 26.39 | 25.58 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 31.4 | 24.64 |
| CDY27759 | Canola | endoplasmic reticulum, vacuole | 23.22 | 24.24 |
| Os01t0350900-02 | Rice | cytosol, nucleus, plasma membrane | 29.02 | 24.18 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 26.39 | 24.04 |
| HORVU1Hr1G022130.3 | Barley | nucleus, plastid | 32.19 | 22.47 |
| KXG32474 | Sorghum | nucleus | 26.39 | 21.88 |
| Zm00001d040789_P001 | Maize | nucleus | 26.12 | 21.38 |
| Zm00001d037596_P001 | Maize | nucleus | 30.87 | 20.67 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 27.18 | 19.32 |
| CDX93159 | Canola | nucleus | 15.04 | 19.19 |
| CDX89655 | Canola | nucleus | 14.25 | 18.49 |
Protein Annotations
| EnsemblPlants:CDX80127 | EnsemblPlantsGene:GSBRNA2T00133033001 | Gene3D:3.30.40.10 | GO:A0A078CTQ3 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF69 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX80127 | ProteinID:CDX80127.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002547FD3 |
| MapMan:19.2.2.1.5.3.3 | : | : | : | : | : |
Description
BnaA05g00290D
Coordinates
chrLK031819:-:2030964..2033203
Molecular Weight (calculated)
42757.0 Da
IEP (calculated)
6.552
GRAVY (calculated)
-0.815
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGANDDDYD RNNRRIANQS TDSAADVPGK RGNEDSSSSL VEVSCSICLE LVVDDGSRSS AKLQCGHQFH LDCIGSAFNM KGTMQCPNCR NVEKGQWLFA
101: NASTRLFPEF VMEDWIPEED LYALSYPEMQ YRVHWCPFGE LSQAGSFEEL EPSAPTYHNE FHGHHAVAMN HSYPAYVAPG PASTPRTSDN SNNPDDHPWN
201: SHSSDHFHQL SVAPHYHHHH HHSTSFSLPG AHVIDGEIDS SAARGISHPH PFLFGYRSNP RTSPAINTQQ GSSSAQMREH LHTQQQHHVY NNQRQHHVNG
301: PNLASPLVSM TRRGLQPLPM PDQNVGFFLY PPPPQPPSTS GGHREPESDQ FHPWERDWFP HFPIPSIHRT ISSFWHRHF
101: NASTRLFPEF VMEDWIPEED LYALSYPEMQ YRVHWCPFGE LSQAGSFEEL EPSAPTYHNE FHGHHAVAMN HSYPAYVAPG PASTPRTSDN SNNPDDHPWN
201: SHSSDHFHQL SVAPHYHHHH HHSTSFSLPG AHVIDGEIDS SAARGISHPH PFLFGYRSNP RTSPAINTQQ GSSSAQMREH LHTQQQHHVY NNQRQHHVNG
301: PNLASPLVSM TRRGLQPLPM PDQNVGFFLY PPPPQPPSTS GGHREPESDQ FHPWERDWFP HFPIPSIHRT ISSFWHRHF
001: MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRSNQ RSSPAINSYQ GSSTQMREQH HAYNHQRQQH HANGPTLASP LISMTRRGLP
301: PPPPPPPMPD QNVGFFIYPG GHHEPETDQI HAWERDWFPH FPVPSNHRTI PSLWHRHF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRSNQ RSSPAINSYQ GSSTQMREQH HAYNHQRQQH HANGPTLASP LISMTRRGLP
301: PPPPPPPMPD QNVGFFIYPG GHHEPETDQI HAWERDWFPH FPVPSNHRTI PSLWHRHF
Arabidopsis Description
RFI2E3 ubiquitin-protein ligase RFI2 [Source:UniProtKB/Swiss-Prot;Acc:O82239]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.