Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039430.1-P | Field mustard | cytosol, mitochondrion, nucleus | 21.55 | 44.44 |
| GSMUA_Achr8P17150_001 | Banana | cytosol, golgi, nucleus, plastid | 20.54 | 27.11 |
| Os05t0154600-01 | Rice | nucleus | 39.06 | 26.61 |
| Solyc01g099790.2.1 | Tomato | nucleus | 37.71 | 26.29 |
| KRG96789 | Soybean | nucleus | 36.7 | 26.14 |
| PGSC0003DMT400063581 | Potato | nucleus | 37.37 | 26.0 |
| KRH33887 | Soybean | nucleus | 37.37 | 25.75 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 36.03 | 25.72 |
| KRH68500 | Soybean | nucleus | 36.03 | 25.66 |
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 37.37 | 25.58 |
| KRG92902 | Soybean | nucleus | 37.71 | 25.51 |
| CDY64147 | Canola | cytosol | 13.47 | 25.48 |
| AT2G47700.1 | Thale cress | nucleus | 30.64 | 25.42 |
| TraesCS1B01G123100.1 | Wheat | cytosol, nucleus, plasma membrane | 37.04 | 25.35 |
| CDX74141 | Canola | nucleus | 34.34 | 24.58 |
| Bra001153.1-P | Field mustard | nucleus | 34.34 | 24.58 |
| CDY40715 | Canola | nucleus | 34.34 | 24.58 |
| EES19051 | Sorghum | nucleus | 36.03 | 24.49 |
| VIT_14s0060g02280.t01 | Wine grape | nucleus | 34.68 | 24.35 |
| CDY53013 | Canola | nucleus | 29.97 | 24.18 |
| AT3G05545.1 | Thale cress | nucleus | 34.34 | 24.0 |
| CDY18820 | Canola | nucleus | 33.33 | 23.57 |
| TraesCS1A01G095100.1 | Wheat | cytosol | 30.98 | 23.53 |
| CDY05177 | Canola | nucleus | 32.66 | 23.49 |
| Bra040540.1-P | Field mustard | nucleus | 33.0 | 23.33 |
| CDY27760 | Canola | cytosol | 6.4 | 23.17 |
| VIT_07s0005g00420.t01 | Wine grape | nucleus | 30.3 | 22.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.33 | 22.65 |
| Bra004436.1-P | Field mustard | nucleus | 28.62 | 22.43 |
| CDX80127 | Canola | nucleus | 28.62 | 22.43 |
| KXG32474 | Sorghum | nucleus | 34.34 | 22.32 |
| Os01t0350900-02 | Rice | cytosol, nucleus, plasma membrane | 33.67 | 21.98 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 35.69 | 21.95 |
| Zm00001d040789_P001 | Maize | nucleus | 33.0 | 21.17 |
| CDY27759 | Canola | endoplasmic reticulum, vacuole | 25.25 | 20.66 |
| HORVU1Hr1G022130.3 | Barley | nucleus, plastid | 37.71 | 20.63 |
| CDX93159 | Canola | nucleus | 20.54 | 20.54 |
| Bra013110.1-P | Field mustard | nucleus | 20.2 | 20.27 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 35.69 | 19.89 |
| CDX89655 | Canola | nucleus | 18.86 | 19.18 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 12.46 | 18.78 |
| Zm00001d037596_P001 | Maize | nucleus | 35.69 | 18.73 |
| Bra039429.1-P | Field mustard | plastid | 7.74 | 16.55 |
| AT4G13490.1 | Thale cress | cytosol, nucleus, plastid | 11.11 | 14.6 |
| CDY31489 | Canola | cytosol | 15.82 | 13.62 |
| GSMUA_Achr8P17170_001 | Banana | vacuole | 14.14 | 12.5 |
| AT2G15260.1 | Thale cress | mitochondrion, nucleus | 15.15 | 12.43 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P02250_001 | EnsemblPlants:GSMUA_Achr2T02250_001 | EnsemblPlantsGene:GSMUA_Achr2G02250_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002965AC9 | UniProt:M0S4G6 | MapMan:19.2.2.1.5.3.3 |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G02250_001]
Coordinates
chr2:-:8119098..8124761
Molecular Weight (calculated)
32754.7 Da
IEP (calculated)
7.653
GRAVY (calculated)
-0.351
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIFPGPSAR VRSGVGFHRF RVSSFSCWRV EGYRRLGHER MGLGKSEKYA GEGEEVVTCS ICFETVMSGG ARSMALLQCG HQFHLDCIGS AFNAKGVMQC
101: PNCRKVEKGD WLYASGPHCL PDVSADEWRH DEDLYNLSHS ETTFGVHWHP FSRLARIPSS FAARASSATA QSLVPPYLRA QGSVHQHNQY HNLQSVHGSL
201: MTGMPQVRGL RSLGPPPPLS LPDQGGYFLF PPSASSGHSA VGGENIGRHH FFAWECERFA PYPVMPAQMD SSGWRPFLHL TGEGQSEGSF HLSIHLA
101: PNCRKVEKGD WLYASGPHCL PDVSADEWRH DEDLYNLSHS ETTFGVHWHP FSRLARIPSS FAARASSATA QSLVPPYLRA QGSVHQHNQY HNLQSVHGSL
201: MTGMPQVRGL RSLGPPPPLS LPDQGGYFLF PPSASSGHSA VGGENIGRHH FFAWECERFA PYPVMPAQMD SSGWRPFLHL TGEGQSEGSF HLSIHLA
001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.