Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 97.19 | 87.56 |
| TraesCS1B01G123100.1 | Wheat | cytosol, nucleus, plasma membrane | 97.19 | 87.56 |
| Os05t0154600-01 | Rice | nucleus | 84.4 | 75.69 |
| EES19051 | Sorghum | nucleus | 79.03 | 70.71 |
| HORVU1Hr1G022130.3 | Barley | nucleus, plastid | 94.63 | 68.14 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 76.47 | 61.9 |
| Zm00001d037596_P001 | Maize | nucleus | 76.21 | 52.65 |
| Bra039430.1-P | Field mustard | cytosol, mitochondrion, nucleus | 13.81 | 37.5 |
| KRH68500 | Soybean | nucleus | 34.53 | 32.37 |
| KRG96789 | Soybean | nucleus | 34.02 | 31.89 |
| KRH33887 | Soybean | nucleus | 35.04 | 31.79 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 33.25 | 31.25 |
| KRG92902 | Soybean | nucleus | 35.04 | 31.21 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 23.53 | 30.98 |
| VIT_14s0060g02280.t01 | Wine grape | nucleus | 33.25 | 30.73 |
| CDY27759 | Canola | endoplasmic reticulum, vacuole | 28.13 | 30.3 |
| Solyc01g099790.2.1 | Tomato | nucleus | 32.48 | 29.81 |
| AT2G47700.1 | Thale cress | nucleus | 27.11 | 29.61 |
| PGSC0003DMT400063581 | Potato | nucleus | 32.23 | 29.51 |
| Bra040540.1-P | Field mustard | nucleus | 31.46 | 29.29 |
| CDY18820 | Canola | nucleus | 31.2 | 29.05 |
| VIT_07s0005g00420.t01 | Wine grape | nucleus | 29.41 | 28.97 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 39.39 | 28.89 |
| AT3G05545.1 | Thale cress | nucleus | 30.43 | 28.0 |
| CDY40715 | Canola | nucleus | 29.41 | 27.71 |
| Bra001153.1-P | Field mustard | nucleus | 29.41 | 27.71 |
| CDX74141 | Canola | nucleus | 29.41 | 27.71 |
| CDY05177 | Canola | nucleus | 28.64 | 27.12 |
| CDY53013 | Canola | nucleus | 25.32 | 26.9 |
| CDX80127 | Canola | nucleus | 25.58 | 26.39 |
| Bra004436.1-P | Field mustard | nucleus | 25.58 | 26.39 |
| TraesCS7A01G268500.1 | Wheat | cytosol | 27.11 | 24.77 |
| Bra039429.1-P | Field mustard | plastid | 6.91 | 19.42 |
| CDX89655 | Canola | nucleus | 13.04 | 17.47 |
| CDX93159 | Canola | nucleus | 12.28 | 16.16 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 7.93 | 15.74 |
| Bra013110.1-P | Field mustard | nucleus | 11.76 | 15.54 |
| AT4G13490.1 | Thale cress | cytosol, nucleus, plastid | 8.18 | 14.16 |
| CDY64147 | Canola | cytosol | 5.63 | 14.01 |
| AT2G15260.1 | Thale cress | mitochondrion, nucleus | 11.51 | 12.43 |
| CDY31489 | Canola | cytosol | 10.49 | 11.88 |
| CDY27760 | Canola | cytosol | 0.77 | 3.66 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G095100.1 | EnsemblPlantsGene:TraesCS1A01G095100 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | SEG:seg | MapMan:19.2.2.1.5.3.3 |
Description
No Description!
Coordinates
chr1A:+:91043144..91048307
Molecular Weight (calculated)
43165.9 Da
IEP (calculated)
6.737
GRAVY (calculated)
-0.686
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIVALRGTE VQLHDCIGSA FNAKGVMQCP NCRKIEKGNW LYANGSRPSH DINMDEWAHE EDLYDVSYSE MPFRFHWCPF GRLAQLPSFF EEGESPPPVT
101: FHDFMGQHVF PENLSVSAAP GAHPCPYVAY LHPLPSLASS SSSHVPERTM DGSAYHDHWN HLAGPSDGRP LQTVQPTDFH HNHWAHLPHS YVQSNGNNGV
201: TEQPGVPFGS MRAARVDGDS QRRGSVVSPS YFSNGSGSRS RAPNVPPLVP QFMRAHGNIN EQYTQSSSSS LFAGAHRSGG MRPAPPPPQP ENPTFCLFPP
301: GSSGHSSMDT DEAGGSRFYA WERDRFAPYP LMPVDCETSW WSSQQSHGAS ESTPAPAPRR LFGQWIGLGR SSPENRSPEG SSYRQMHSPR M
101: FHDFMGQHVF PENLSVSAAP GAHPCPYVAY LHPLPSLASS SSSHVPERTM DGSAYHDHWN HLAGPSDGRP LQTVQPTDFH HNHWAHLPHS YVQSNGNNGV
201: TEQPGVPFGS MRAARVDGDS QRRGSVVSPS YFSNGSGSRS RAPNVPPLVP QFMRAHGNIN EQYTQSSSSS LFAGAHRSGG MRPAPPPPQP ENPTFCLFPP
301: GSSGHSSMDT DEAGGSRFYA WERDRFAPYP LMPVDCETSW WSSQQSHGAS ESTPAPAPRR LFGQWIGLGR SSPENRSPEG SSYRQMHSPR M
001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.