Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040540.1-P | Field mustard | nucleus | 99.29 | 99.29 |
| AT3G05545.1 | Thale cress | nucleus | 79.76 | 78.82 |
| CDX74141 | Canola | nucleus | 76.43 | 77.35 |
| CDY27759 | Canola | endoplasmic reticulum, vacuole | 65.95 | 76.31 |
| CDY40715 | Canola | nucleus | 73.33 | 74.22 |
| CDY05177 | Canola | nucleus | 71.43 | 72.64 |
| VIT_14s0060g02280.t01 | Wine grape | nucleus | 48.1 | 47.75 |
| KRH68500 | Soybean | nucleus | 45.95 | 46.28 |
| KRG92902 | Soybean | nucleus | 48.33 | 46.24 |
| KRG96789 | Soybean | nucleus | 45.71 | 46.04 |
| KRH33887 | Soybean | nucleus | 46.9 | 45.71 |
| Solyc01g099790.2.1 | Tomato | nucleus | 45.48 | 44.84 |
| PGSC0003DMT400063581 | Potato | nucleus | 45.24 | 44.5 |
| CDY27760 | Canola | cytosol | 7.62 | 39.02 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 23.57 | 33.33 |
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 34.29 | 33.18 |
| TraesCS1B01G123100.1 | Wheat | cytosol, nucleus, plasma membrane | 33.81 | 32.72 |
| EES19051 | Sorghum | nucleus | 32.86 | 31.58 |
| CDY64147 | Canola | cytosol | 11.67 | 31.21 |
| TraesCS1A01G095100.1 | Wheat | cytosol | 29.05 | 31.2 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 30.71 | 31.01 |
| CDX80127 | Canola | nucleus | 27.86 | 30.87 |
| Os05t0154600-01 | Rice | nucleus | 31.67 | 30.5 |
| CDY53013 | Canola | nucleus | 26.67 | 30.43 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 13.33 | 28.43 |
| Os01t0350900-02 | Rice | cytosol, nucleus, plasma membrane | 30.0 | 27.69 |
| CDX89655 | Canola | nucleus | 19.05 | 27.4 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 31.43 | 27.33 |
| KXG32474 | Sorghum | nucleus | 29.05 | 26.7 |
| Zm00001d040789_P001 | Maize | nucleus | 28.1 | 25.49 |
| HORVU1Hr1G022130.3 | Barley | nucleus, plastid | 32.62 | 25.23 |
| CDX93159 | Canola | nucleus | 17.38 | 24.58 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 30.48 | 24.02 |
| Zm00001d037596_P001 | Maize | nucleus | 32.14 | 23.85 |
| CDY31489 | Canola | cytosol | 16.67 | 20.29 |
Protein Annotations
| EnsemblPlants:CDY18820 | EnsemblPlantsGene:GSBRNA2T00005987001 | Gene3D:3.30.40.10 | GO:A0A078FWL1 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY18820 | ProteinID:CDY18820.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EDCE4F |
| UniProt:A0A078FWL1 | MapMan:19.2.2.1.5.3.3 | : | : | : | : |
Description
BnaAnng02850DBnaAnng02850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWL1]
Coordinates
chrLK032089:-:326699..329775
Molecular Weight (calculated)
45211.5 Da
IEP (calculated)
6.271
GRAVY (calculated)
-0.655
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLGNNATKF DFDANDLAAD DSSDGDSIDE VNAFGSVLCS ICIETVTKEG DRAWAKLHCG HEFHLDCIGS AFNTKGVMQC PNCRKVEKGQ WLYANGCRSN
101: PEFSAEEWVH EEDIYDIGTY SELAFGVHWC PFGSSARLPS FEDGEFSPSS YQELLGQQGY FTEPAAPTAG HPCPYVTYFG PVHSSSSSSG GSDTSSFPSH
201: WNTSGSSEVP PPYGFPVDPH FHGWDYHSPP PPPPQHFSAA SGAHVGSPTH PTPPPAAART SRANGSDVIR PRPPHFIRPS YHGHSSGGRA GSSVASIPRS
301: PPFPGSNVRT RDRMQALQAY HQQSSAQSHQ PDSPIVSHGP VFSSGRRPSR ASLMGGSTSS SSDQAGGSGF IRFNIWEREP YMQLQPAYPV NQMDREPPSL
401: WTFNEGSGSL HQRHGAGGSS
101: PEFSAEEWVH EEDIYDIGTY SELAFGVHWC PFGSSARLPS FEDGEFSPSS YQELLGQQGY FTEPAAPTAG HPCPYVTYFG PVHSSSSSSG GSDTSSFPSH
201: WNTSGSSEVP PPYGFPVDPH FHGWDYHSPP PPPPQHFSAA SGAHVGSPTH PTPPPAAART SRANGSDVIR PRPPHFIRPS YHGHSSGGRA GSSVASIPRS
301: PPFPGSNVRT RDRMQALQAY HQQSSAQSHQ PDSPIVSHGP VFSSGRRPSR ASLMGGSTSS SSDQAGGSGF IRFNIWEREP YMQLQPAYPV NQMDREPPSL
401: WTFNEGSGSL HQRHGAGGSS
001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.