Factsheet for GSMUA_Achr5P27050_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P04210_001
GSMUA_Achr6P29810_001
GSMUA_Achr9P10780_001
GSMUA_Achr9P25520_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47700.1	GSMUA_Achr6P29810_001	AT1G75440.1	21798944
AT2G47700.1	GSMUA_Achr9P10780_001	AT1G75440.1	21798944
AT2G47700.1	GSMUA_Achr9P25520_001	AT1G75440.1	21798944
AT2G47700.1	GSMUA_Achr5P04210_001	AT3G08690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	16.35	47.22
GSMUA_Achr8P06630_001	Banana	nucleus	54.09	42.21
GSMUA_Achr2P02250_001	Banana	nucleus	25.72	36.03
KRG96789	Soybean	nucleus	35.58	35.49
KRH68500	Soybean	nucleus	35.1	35.01
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	36.3	34.79
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	36.3	34.79
VIT_14s0060g02280.t01	Wine grape	nucleus	35.1	34.52
Os05t0154600-01	Rice	nucleus	36.06	34.4
KRH33887	Soybean	nucleus	35.1	33.87
Solyc01g099790.2.1	Tomato	nucleus	34.62	33.8
PGSC0003DMT400063581	Potato	nucleus	34.13	33.26
TraesCS1A01G095100.1	Wheat	cytosol	31.25	33.25
EES19051	Sorghum	nucleus	34.86	33.18
KRG92902	Soybean	nucleus	34.62	32.8
CDY40715	Canola	nucleus	32.45	32.53
CDX74141	Canola	nucleus	31.97	32.05
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	34.86	31.87
Bra001153.1-P	Field mustard	nucleus	31.73	31.81
AT3G05545.1	Thale cress	nucleus	32.21	31.53
CDY05177	Canola	nucleus	30.77	30.99
CDY18820	Canola	nucleus	31.01	30.71
Bra040540.1-P	Field mustard	nucleus	30.53	30.24
GSMUA_Achr8P17150_001	Banana	cytosol, golgi, nucleus, plastid	15.87	29.33
AT2G47700.1	Thale cress	nucleus	25.0	29.05
CDY27759	Canola	endoplasmic reticulum, vacuole	25.0	28.65
VIT_07s0005g00420.t01	Wine grape	nucleus	27.16	28.46
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	32.93	28.36
CDY53013	Canola	nucleus	25.0	28.26
GSMUA_AchrUn_...	Banana	nucleus	28.85	27.46
CDY64147	Canola	cytosol	10.34	27.39
HORVU1Hr1G022130.3	Barley	nucleus, plastid	35.34	27.07
CDY27760	Canola	cytosol	5.29	26.83
Bra004436.1-P	Field mustard	nucleus	24.04	26.39
CDX80127	Canola	nucleus	24.04	26.39
KXG32474	Sorghum	nucleus	28.85	26.26
Zm00001d037596_P001	Maize	nucleus	34.13	25.09
Zm00001d040789_P001	Maize	nucleus	27.88	25.05
CDX85292	Canola	cytosol, golgi, peroxisome	10.82	22.84
Bra013110.1-P	Field mustard	nucleus	15.38	21.62
CDX93159	Canola	nucleus	15.14	21.21
CDX89655	Canola	nucleus	14.18	20.21
Bra039429.1-P	Field mustard	plastid	6.49	19.42
GSMUA_Achr8P17170_001	Banana	vacuole	15.38	19.05
AT4G13490.1	Thale cress	cytosol, nucleus, plastid	9.13	16.81
CDY31489	Canola	cytosol	12.74	15.36
AT2G15260.1	Thale cress	mitochondrion, nucleus	11.54	13.26

Protein Annotations

EnsemblPlants:GSMUA_Achr5P27050_001	EnsemblPlants:GSMUA_Achr5T27050_001	EnsemblPlantsGene:GSMUA_Achr5G27050_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002961128	UniProt:M0T230	MapMan:19.2.2.1.5.3.3

Description

Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G27050_001]

Coordinates

chr5:-:27668099..27675271

Molecular Weight (calculated)

46022.6 Da

IEP (calculated)

6.261

GRAVY (calculated)

-0.422

Length

416 amino acids

Sequence
(BLAST)

001: MKYLGLGWGG LRLDTEDGDE VVHVYCSICL NAVKCGGDRS TAKLQCGHEF HLDCIGSAFN AKGVMQCPNC RKVEEGNWFY ANGSHSTPEL TMDEWIQDED
101: LYNLNYAESP FGGHWFPIGS LARIPSFEEG ESSPAVSFWD LSGYHANFSE NRATVSVAHP CPFMAYMPPL QPSSSSNNHS FDSNSSDPGY HHQWSHFPRP
201: REFQTLYMMA PSNIHYHGWE HCHASYSPNA HINSAESLHF ARLATNGLPA TDSVFHPFVL SHGIVSRAGA TGSSAPSLVP PYLRTHGNGL EHYQLQHSQI
301: THGTGMPLSG SLWSFNPAEQ CGPFLVSPTV QTNVDAENIT STRLYAWERQ CFAPHPFFPI DREPSCWGPF LQANGSGVSD SSPPQMVYFP LNSSERLPAQ
401: AGHNRPMPPP RMLPLL

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.