Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 64.88 | 49.89 |
| Os08t0539300-01 | Rice | nucleus | 27.38 | 21.7 |
| OQU80800 | Sorghum | nucleus | 26.79 | 21.08 |
| TraesCS7D01G266300.1 | Wheat | cytosol | 25.3 | 19.77 |
| Zm00001d052697_P002 | Maize | cytosol | 25.3 | 19.77 |
| TraesCS7A01G268500.1 | Wheat | cytosol | 25.0 | 19.63 |
| TraesCS7B01G163800.1 | Wheat | cytosol | 24.4 | 19.07 |
| Zm00001d031684_P001 | Maize | cytosol | 20.24 | 16.43 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 19.05 | 15.38 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 12.5 | 14.14 |
| Os09t0511500-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 16.96 | 14.11 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 18.15 | 11.44 |
| GSMUA_Achr8P17150_001 | Banana | cytosol, golgi, nucleus, plastid | 2.98 | 4.44 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P17170_001 | EnsemblPlants:GSMUA_Achr8T17170_001 | EnsemblPlantsGene:GSMUA_Achr8G17170_001 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | SEG:seg |
| UniParc:UPI000295D426 | UniProt:M0TR70 | MapMan:19.2.2.1.5.3.3 | : | : | : |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G17170_001]
Coordinates
chr8:+:16365252..16366767
Molecular Weight (calculated)
37138.0 Da
IEP (calculated)
8.108
GRAVY (calculated)
-0.665
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHPFYFFLF SPDFGYNSVY QLKICSSCRE AESMPSSYHE FMSNSMFRDH SNSSSSSHIC PYLALHGFPN AMRAAPLSSA DSIPENGLFH QHPSSLGGQS
101: SSDMMNSHSF PSTEPQSHNW QQQHSPSFPL SGNVDQSASQ YGVRMARNDT SNQHRLGSFV HPHHLIHGSV ARNGSNLVGS LGPPVTGEIR GHNGGLGSHM
201: YHPSLYSSSL RSSPFAPIRR MRPRGLTLVS SIAAPSSAEV GGFYGFSVSG SVNRNHQEGE SIGRHVDRFY GWGREGISPL PWIPIEGESH WWSPFNPNQN
301: PQSGNYTQRA TAERSTPNCP ENGYQHRPPP RLPPYM
101: SSDMMNSHSF PSTEPQSHNW QQQHSPSFPL SGNVDQSASQ YGVRMARNDT SNQHRLGSFV HPHHLIHGSV ARNGSNLVGS LGPPVTGEIR GHNGGLGSHM
201: YHPSLYSSSL RSSPFAPIRR MRPRGLTLVS SIAAPSSAEV GGFYGFSVSG SVNRNHQEGE SIGRHVDRFY GWGREGISPL PWIPIEGESH WWSPFNPNQN
301: PQSGNYTQRA TAERSTPNCP ENGYQHRPPP RLPPYM
0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT
Arabidopsis Description
SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.