Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P17170_001 | Banana | vacuole | 49.89 | 64.88 |
| GSMUA_Achr8P17150_001 | Banana | cytosol, golgi, nucleus, plastid | 21.05 | 40.89 |
| OQU80800 | Sorghum | nucleus | 37.99 | 38.88 |
| Os08t0539300-01 | Rice | nucleus | 37.53 | 38.68 |
| TraesCS7A01G268500.1 | Wheat | cytosol | 36.16 | 36.92 |
| TraesCS7D01G266300.1 | Wheat | cytosol | 36.16 | 36.74 |
| Zm00001d052697_P002 | Maize | cytosol | 35.7 | 36.28 |
| TraesCS7B01G163800.1 | Wheat | cytosol | 35.47 | 36.05 |
| Zm00001d031684_P001 | Maize | cytosol | 32.95 | 34.78 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 22.65 | 33.33 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 27.46 | 28.85 |
| Os09t0511500-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 24.49 | 26.49 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 30.21 | 24.77 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP05940_001 | EnsemblPlants:GSMUA_AchrUn_randomT05940_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG05940_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000296E68B | UniProt:M0U6Q5 | MapMan:19.2.2.1.5.3.3 |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG05940_001]
Coordinates
chrchrUn_random:+:25500794..25524064
Molecular Weight (calculated)
47515.3 Da
IEP (calculated)
6.623
GRAVY (calculated)
-0.487
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDSKAMDLE KTDFSSVGKG TAAAPACSIC LELVLDKGRR STAKLQCGHE FHLDCIGSAF NAKGAMQCPN CRKVEKGRWL YANGNHSSAD FDIDGWVTED
101: IYDLGYSELP FGFQWLPFRG FTQLASLFEE AESVPSFYHE FMGNSMFQDP TNSSTSSHIC PYLALHGFPN AMRAAPLSSA DSVPDSGLFH QHPVSLGAQS
201: SSDMMNSHSF PATEPPQTHS WQQQHPLSFP FSGNADQSAS QYGVRMSRND TGNQHRLGSF VHPHPLMHGS VARSGSNLVG SVGPPMTGEV RGHNSGLGSH
301: MYQPSLFSSS LLSSPFTPIR RMRPRGVTLV SSVGAPSSAE VGGFYGFSVS GSVNRNHQEG DNLGRHVDRF YGWGRDGISP LPWIPVEGES HWWGPFNPSE
401: SPVPGGFTQR ATPERATHNC PENGYQQMPP PGLPPYM
101: IYDLGYSELP FGFQWLPFRG FTQLASLFEE AESVPSFYHE FMGNSMFQDP TNSSTSSHIC PYLALHGFPN AMRAAPLSSA DSVPDSGLFH QHPVSLGAQS
201: SSDMMNSHSF PATEPPQTHS WQQQHPLSFP FSGNADQSAS QYGVRMSRND TGNQHRLGSF VHPHPLMHGS VARSGSNLVG SVGPPMTGEV RGHNSGLGSH
301: MYQPSLFSSS LLSSPFTPIR RMRPRGVTLV SSVGAPSSAE VGGFYGFSVS GSVNRNHQEG DNLGRHVDRF YGWGRDGISP LPWIPVEGES HWWGPFNPSE
401: SPVPGGFTQR ATPERATHNC PENGYQQMPP PGLPPYM
001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.