Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU80800 | Sorghum | nucleus | 80.23 | 80.8 |
| Zm00001d031684_P001 | Maize | cytosol | 68.84 | 71.5 |
| Os08t0539300-01 | Rice | nucleus | 66.51 | 67.45 |
| TraesCS7D01G266300.1 | Wheat | cytosol | 64.65 | 64.65 |
| TraesCS7A01G268500.1 | Wheat | cytosol | 63.72 | 64.02 |
| TraesCS7B01G163800.1 | Wheat | cytosol | 63.49 | 63.49 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.28 | 35.7 |
| GSMUA_Achr8P17170_001 | Banana | vacuole | 19.77 | 25.3 |
| GSMUA_Achr8P17150_001 | Banana | cytosol, golgi, nucleus, plastid | 12.79 | 24.44 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 23.72 | 21.12 |
| Zm00001d040789_P001 | Maize | nucleus | 22.56 | 20.95 |
| Zm00001d037596_P001 | Maize | nucleus | 23.26 | 17.67 |
Protein Annotations
| EMBL:BT037032 | EnsemblPlants:Zm00001d052697_P002 | EnsemblPlants:Zm00001d052697_T002 | EnsemblPlantsGene:Zm00001d052697 | EntrezGene:100216604 | Gene3D:3.30.40.10 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 |
| PFAM:PF13639 | PFscan:PS50089 | ProteinID:AQK57764.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI00017B6FEE | UniProt:B4FIU4 | MapMan:19.2.2.1.5.3.3 | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr4:+:197821516..197840855
Molecular Weight (calculated)
46307.0 Da
IEP (calculated)
7.723
GRAVY (calculated)
-0.440
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLERSPPAS SAEAPGDGGG GGAAACSICL DAVLARSAGR SVAKLQCGHE FHLDCIGSAF NAKGAMQCPN CRKIEKGRWL YASGHRASVD IDMGGWVTSD
101: NYDITSELPF GFQWCPFSGF TRLASMFEER EAELTYHTTG DRSSAASSSL VCPYLALRGF LHPVHVPSTS NPGAESTSFR RHATGLEGHA TLDLNNAQLF
201: HAIESINHDS EHRHLSNLPV SGIPEYSMTP FGIGLPRYDS GSQQRFRSYA HHHPLIHRPA PRSGSNLVAP PLGSVPAVVA AAETARGSHM YQRSSVHGSP
301: FPPTTTRRVR PRALTITSFI AATSSGEIGG PHGFSAPGAA MNRSVSDAEG ISRPIDRPYN AWGREGFAPF PWIPAEGESH WWGTFNPVQN HAHGGFSRRP
401: AGERMPPQSQ SHPENSYQAV PPSQRMPPFL
101: NYDITSELPF GFQWCPFSGF TRLASMFEER EAELTYHTTG DRSSAASSSL VCPYLALRGF LHPVHVPSTS NPGAESTSFR RHATGLEGHA TLDLNNAQLF
201: HAIESINHDS EHRHLSNLPV SGIPEYSMTP FGIGLPRYDS GSQQRFRSYA HHHPLIHRPA PRSGSNLVAP PLGSVPAVVA AAETARGSHM YQRSSVHGSP
301: FPPTTTRRVR PRALTITSFI AATSSGEIGG PHGFSAPGAA MNRSVSDAEG ISRPIDRPYN AWGREGFAPF PWIPAEGESH WWGTFNPVQN HAHGGFSRRP
401: AGERMPPQSQ SHPENSYQAV PPSQRMPPFL
001: MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRLAS QTPYCSQLLA ECFTIFFWNW AL
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRLAS QTPYCSQLLA ECFTIFFWNW AL
Arabidopsis Description
RFI2E3 ubiquitin-protein ligase RFI2 [Source:UniProtKB/Swiss-Prot;Acc:O82239]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.