Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G163800.1 | Wheat | cytosol | 97.66 | 97.21 |
| TraesCS7D01G266300.1 | Wheat | cytosol | 97.43 | 96.98 |
| Os08t0539300-01 | Rice | nucleus | 72.9 | 73.58 |
| OQU80800 | Sorghum | nucleus | 70.09 | 70.26 |
| Zm00001d031684_P001 | Maize | cytosol | 65.42 | 67.63 |
| Zm00001d052697_P002 | Maize | cytosol | 64.02 | 63.72 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.92 | 36.16 |
| TraesCS1A01G095100.1 | Wheat | cytosol | 24.77 | 27.11 |
| GSMUA_Achr8P17170_001 | Banana | vacuole | 19.63 | 25.0 |
| GSMUA_Achr8P17150_001 | Banana | cytosol, golgi, nucleus, plastid | 13.08 | 24.89 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G268500.1 | EnsemblPlantsGene:TraesCS7A01G268500 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16448 | MapMan:19.2.2.1.5.3.3 | : | : |
Description
No Description!
Coordinates
chr7A:-:271794710..271799864
Molecular Weight (calculated)
46042.0 Da
IEP (calculated)
7.320
GRAVY (calculated)
-0.447
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLERSPPPD HAAEAAGGGA CSICLDPVTG RAGGRSIAKL QCGHEFHLDC IGSAFNAKGA MQCPNCRKIE KGRWLYATGQ RPSPDIDIGG WVTGETYDIA
101: SDLPFGFQWC PFSGFTQLAS VFEEGEAEPP SYHTVADHSS AASSSLVCPY LSLRGFLHPV HVPLGSGAEG ASFHRHPTSL EGHAAPDLGN TQAAFHATEP
201: RILDSEHRYL TNLPVSGIPD HSVAPFGIGL PRYETSSQQR SRPYVHHHPL VHRPTPRNGS NLVAPLGSVP AVMGETRGHG HGARGHMYQH SMHASMQGSP
301: FPPTARRVRP RALTITSFIA AAAASSAEVG VPHGFAPPAA VNRSLPSDGE GVSRPPVDRP YAWGREGFGP FPWVPVDGEP HWWSTFNPMQ NHTHGGFTRR
401: PAPGERIPQS HPDNVYQPVP PQRMPPFL
101: SDLPFGFQWC PFSGFTQLAS VFEEGEAEPP SYHTVADHSS AASSSLVCPY LSLRGFLHPV HVPLGSGAEG ASFHRHPTSL EGHAAPDLGN TQAAFHATEP
201: RILDSEHRYL TNLPVSGIPD HSVAPFGIGL PRYETSSQQR SRPYVHHHPL VHRPTPRNGS NLVAPLGSVP AVMGETRGHG HGARGHMYQH SMHASMQGSP
301: FPPTARRVRP RALTITSFIA AAAASSAEVG VPHGFAPPAA VNRSLPSDGE GVSRPPVDRP YAWGREGFGP FPWVPVDGEP HWWSTFNPMQ NHTHGGFTRR
401: PAPGERIPQS HPDNVYQPVP PQRMPPFL
001: MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRLAS QTPYCSQLLA ECFTIFFWNW AL
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRLAS QTPYCSQLLA ECFTIFFWNW AL
Arabidopsis Description
RFI2E3 ubiquitin-protein ligase RFI2 [Source:UniProtKB/Swiss-Prot;Acc:O82239]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.