Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031684_P001 | Maize | cytosol | 81.73 | 84.3 |
| Zm00001d052697_P002 | Maize | cytosol | 80.8 | 80.23 |
| Os08t0539300-01 | Rice | nucleus | 76.11 | 76.65 |
| TraesCS7D01G266300.1 | Wheat | cytosol | 71.66 | 71.16 |
| TraesCS7A01G268500.1 | Wheat | cytosol | 70.26 | 70.09 |
| TraesCS7B01G163800.1 | Wheat | cytosol | 70.49 | 70.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.88 | 37.99 |
| GSMUA_Achr8P17170_001 | Banana | vacuole | 21.08 | 26.79 |
| GSMUA_Achr8P17150_001 | Banana | cytosol, golgi, nucleus, plastid | 13.82 | 26.22 |
| EES19051 | Sorghum | nucleus | 24.36 | 23.8 |
| KXG32474 | Sorghum | nucleus | 22.25 | 20.79 |
Protein Annotations
| EnsemblPlants:OQU80800 | EnsemblPlantsGene:SORBI_3007G187200 | EntrezGene:8060919 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:OQU80800 | ProteinID:OQU80800.1 | RefSeq:XP_002445782.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0001A87EF9 | UniProt:A0A1Z5RAL4 | MapMan:19.2.2.1.5.3.3 | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:62010473..62019926
Molecular Weight (calculated)
46085.7 Da
IEP (calculated)
7.608
GRAVY (calculated)
-0.524
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLERSPPAS PAEAAGGGAA ACSICLDPVL ARGAGRSVAK LQCGHEFHLD CIGSAFNAKG AMQCPNCRKI EKGRWLYASG HRPSADIDMG GWVTGDNYDI
101: TSELPFGFQW CPFSGFTQLA SVFEEREAEP TYHTTGDHSS AASSSLVCPY LALRGFLHPV HVPSTSNSGA ESTSFHRHST GLEGHATPDL NNAPVFHATE
201: SRNHDSEHRH LSNLPVSGIP EYSMTPFGIG VPRYDSGSQQ RLRSYAHHHP LIHRPTPRSG SNLVAPLGSV PAVVAETRGH GHGARGHMYQ QSMHSSVQGS
301: PFPPTTRRVR PRALTITSFI AATSSGEIGG PHAHGFSAPG AVNRSVSDAE GISRPIDRPY TWGREGFAPF PWIPAEGESH WWGTFNPMQN HAHGSFTRRP
401: AGERMPQSHP ENGYQPVPPS QRMPPFL
101: TSELPFGFQW CPFSGFTQLA SVFEEREAEP TYHTTGDHSS AASSSLVCPY LALRGFLHPV HVPSTSNSGA ESTSFHRHST GLEGHATPDL NNAPVFHATE
201: SRNHDSEHRH LSNLPVSGIP EYSMTPFGIG VPRYDSGSQQ RLRSYAHHHP LIHRPTPRSG SNLVAPLGSV PAVVAETRGH GHGARGHMYQ QSMHSSVQGS
301: PFPPTTRRVR PRALTITSFI AATSSGEIGG PHAHGFSAPG AVNRSVSDAE GISRPIDRPY TWGREGFAPF PWIPAEGESH WWGTFNPMQN HAHGSFTRRP
401: AGERMPQSHP ENGYQPVPPS QRMPPFL
001: MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRSNQ RSSPAINSYQ GSSTQMREQH HAYNHQRQQH HANGPTLASP LISMTRRGLP
301: PPPPPPPMPD QNVGFFIYPG GHHEPETDQI HAWERDWFPH FPVPSNHRTI PSLWHRHF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRSNQ RSSPAINSYQ GSSTQMREQH HAYNHQRQQH HANGPTLASP LISMTRRGLP
301: PPPPPPPMPD QNVGFFIYPG GHHEPETDQI HAWERDWFPH FPVPSNHRTI PSLWHRHF
Arabidopsis Description
RFI2E3 ubiquitin-protein ligase RFI2 [Source:UniProtKB/Swiss-Prot;Acc:O82239]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.