Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES19701 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47700.1 | EES19701 | AT3G08690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d040789_P001 | Maize | nucleus | 81.62 | 80.56 |
| EES19051 | Sorghum | nucleus | 52.3 | 54.69 |
| Os01t0350900-02 | Rice | cytosol, nucleus, plasma membrane | 53.39 | 53.63 |
| Bra039430.1-P | Field mustard | cytosol, mitochondrion, nucleus | 14.88 | 47.22 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 22.32 | 34.34 |
| KRH33887 | Soybean | nucleus | 30.2 | 32.02 |
| KRG92902 | Soybean | nucleus | 30.42 | 31.66 |
| CDY05177 | Canola | nucleus | 28.23 | 31.23 |
| KRG96789 | Soybean | nucleus | 28.45 | 31.18 |
| VIT_07s0005g00420.t01 | Wine grape | nucleus | 26.7 | 30.73 |
| VIT_14s0060g02280.t01 | Wine grape | nucleus | 28.23 | 30.5 |
| KRH68500 | Soybean | nucleus | 27.79 | 30.46 |
| AT3G05545.1 | Thale cress | nucleus | 28.01 | 30.12 |
| Solyc01g099790.2.1 | Tomato | nucleus | 27.35 | 29.34 |
| Bra040540.1-P | Field mustard | nucleus | 26.91 | 29.29 |
| CDY40715 | Canola | nucleus | 26.48 | 29.16 |
| CDY18820 | Canola | nucleus | 26.7 | 29.05 |
| PGSC0003DMT400063581 | Potato | nucleus | 27.13 | 29.04 |
| CDX74141 | Canola | nucleus | 26.26 | 28.92 |
| Bra001153.1-P | Field mustard | nucleus | 26.26 | 28.92 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 26.26 | 28.85 |
| AT2G47700.1 | Thale cress | nucleus | 22.1 | 28.21 |
| CDY27759 | Canola | endoplasmic reticulum, vacuole | 22.32 | 28.1 |
| CDY27760 | Canola | cytosol | 5.03 | 28.05 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 31.07 | 26.64 |
| CDY53013 | Canola | nucleus | 21.44 | 26.63 |
| CDX80127 | Canola | nucleus | 21.88 | 26.39 |
| Bra004436.1-P | Field mustard | nucleus | 21.88 | 26.39 |
| CDY64147 | Canola | cytosol | 8.97 | 26.11 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 9.63 | 22.34 |
| OQU80800 | Sorghum | nucleus | 20.79 | 22.25 |
| CDX89655 | Canola | nucleus | 14.0 | 21.92 |
| Bra039429.1-P | Field mustard | plastid | 6.13 | 20.14 |
| CDX93159 | Canola | nucleus | 12.91 | 19.87 |
| Bra013110.1-P | Field mustard | nucleus | 12.69 | 19.59 |
| AT4G13490.1 | Thale cress | cytosol, nucleus, plastid | 9.63 | 19.47 |
| CDY31489 | Canola | cytosol | 11.16 | 14.78 |
| AT2G15260.1 | Thale cress | mitochondrion, nucleus | 10.28 | 12.98 |
Protein Annotations
| EnsemblPlants:KXG32474 | EnsemblPlantsGene:SORBI_3003G159500 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | PFAM:PF13639 | PFscan:PS50089 | ProteinID:KXG32474 |
| ProteinID:KXG32474.1 | ProteinID:OQU86831.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00081ABE5D |
| UniProt:A0A1B6Q3J1 | MapMan:19.2.2.1.5.3.3 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:18399707..18404681
Molecular Weight (calculated)
48915.2 Da
IEP (calculated)
4.237
GRAVY (calculated)
-0.612
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGAQEDEE ETTMVAEGGV REEEQAAAEG AGEEEQLGQG GGGEGEGEGE GEGGCGEEKA AAVMSCSICL DTVVAGGEER STARLQCGHE FHLDCIGSAF
101: NAKGIMQCPN CRTIENGNWL YANGSRSSQD VNNDEWGYDD LYDHGHSELA TFVPLRIQWC PIGRLELPSL FEEVESSAPA TFNDFTGQFN SEPMAPVPAT
201: PHPGPYLAYF QPAPPPASSS THVAERTMDG AAYHDHWNTM AGLSDVRRPW AYYSQPNNDN GIAEQQGLPL GAMRVGGVDS ESQQRGSLPS FYGNGSGRPR
301: IPSVPPMAPQ FIRAHGNLID QFQQTSSSLF AGSQQSGGMR PLGAVGPSVP PPENTSFCLF PPASSGPSTM EAEDVRANQF YAWERDCLAP YPLMPVNNEG
401: TWWSSSQQQP PQGAPEPAAS APRRLSGQWI GGVGRLPPSE NRSPDDSPFR PLHIPRM
101: NAKGIMQCPN CRTIENGNWL YANGSRSSQD VNNDEWGYDD LYDHGHSELA TFVPLRIQWC PIGRLELPSL FEEVESSAPA TFNDFTGQFN SEPMAPVPAT
201: PHPGPYLAYF QPAPPPASSS THVAERTMDG AAYHDHWNTM AGLSDVRRPW AYYSQPNNDN GIAEQQGLPL GAMRVGGVDS ESQQRGSLPS FYGNGSGRPR
301: IPSVPPMAPQ FIRAHGNLID QFQQTSSSLF AGSQQSGGMR PLGAVGPSVP PPENTSFCLF PPASSGPSTM EAEDVRANQF YAWERDCLAP YPLMPVNNEG
401: TWWSSSQQQP PQGAPEPAAS APRRLSGQWI GGVGRLPPSE NRSPDDSPFR PLHIPRM
001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.