Factsheet for VIT_14s0060g02280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099790.2.1	Tomato	nucleus	73.76	73.24
KRG96789	Soybean	nucleus	70.21	71.22
KRH33887	Soybean	nucleus	72.1	70.77
PGSC0003DMT400063581	Potato	nucleus	71.39	70.73
KRG92902	Soybean	nucleus	73.29	70.61
KRH68500	Soybean	nucleus	69.5	70.5
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	19.15	56.25
VIT_07s0005g00420.t01	Wine grape	nucleus	49.41	52.64
CDY05177	Canola	nucleus	48.7	49.88
AT3G05545.1	Thale cress	nucleus	49.88	49.65
Bra001153.1-P	Field mustard	nucleus	48.7	49.64
CDY40715	Canola	nucleus	48.7	49.64
CDX74141	Canola	nucleus	48.46	49.4
CDY27759	Canola	endoplasmic reticulum, vacuole	41.84	48.76
CDY18820	Canola	nucleus	47.75	48.1
Bra040540.1-P	Field mustard	nucleus	47.28	47.62
Bra039429.1-P	Field mustard	plastid	14.66	44.6
CDY27760	Canola	cytosol	6.86	35.37
GSMUA_Achr5P27050_001	Banana	nucleus	34.52	35.1
Os05t0154600-01	Rice	nucleus	36.17	35.09
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	35.7	34.79
GSMUA_Achr2P02250_001	Banana	nucleus	24.35	34.68
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	35.46	34.56
EES19051	Sorghum	nucleus	35.46	34.32
TraesCS1A01G095100.1	Wheat	cytosol	30.73	33.25
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	33.57	31.21
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	34.99	30.64
GSMUA_Achr8P06630_001	Banana	nucleus	36.88	29.27
KXG32474	Sorghum	nucleus	30.5	28.23
HORVU1Hr1G022130.3	Barley	nucleus, plastid	35.7	27.81
Zm00001d040789_P001	Maize	nucleus	29.08	26.57
Zm00001d037596_P001	Maize	nucleus	34.52	25.8

Protein Annotations

EntrezGene:100251003	wikigene:100251003	MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	EMBL:AM445604	ProteinID:CAN80748
ProteinID:CAN80748.1	ProteinID:CCB61857	ProteinID:CCB61857.1	UniProt:F6I4M0	EMBL:FN596746	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100251003
wikigene:LOC100251003	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI00019849D3	ArrayExpress:VIT_14s0060g02280	EnsemblPlantsGene:VIT_14s0060g02280	EnsemblPlants:VIT_14s0060g02280.t01	unigene:Vvi.20197
RefSeq:XP_002279542	RefSeq:XP_002279542.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr14:+:1845071..1855088

Molecular Weight (calculated)

45998.5 Da

IEP (calculated)

6.502

GRAVY (calculated)

-0.636

Length

423 amino acids

Sequence
(BLAST)

001: MGLDGADLSD DGDGEGKAFA ASSVSCSICL EIVTDNGDRA WAKLQCGHQF HLDCIGSAFN IKGAMQCPNC RKIEKGQWLY ANGCRTFPEF NMDDLTHDED
101: LYDSYSEMSF GVHWCPFSGL TRLPSSFDEG DFSSTSYNDL LGQHAIFAEH TAVSSATHPC PYIAYFGPIH PSSSNSSGSV SDGSNFNNHW NGPSVPSEIP
201: TSYAFPTMDF HYHSWEHHSP PFSTNSSRIG ADQPSIPPVT QRPARANSDI PRSGSFMHPF LVGHSSGARA GSSVASSMIP PYPGSNARAR DRVQALQAYY
301: QQQQPSNSPA MRTPMISGTR RSGSHRGLAQ VGPVASSSDQ SSGFYFFPSG TSGRNFQEAE NPLPTRFHGW EREHLPSFPL TQVERDSGWG AFHQAGSGSD
401: SGIRPSSFRQ RHGSDRTSSQ NRS

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.