Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010618_P003 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47700.1 | Zm00001d010618_P003 | AT3G08690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19051 | Sorghum | nucleus | 83.02 | 91.76 |
| TraesCS1A01G095100.1 | Wheat | cytosol | 61.9 | 76.47 |
| Os05t0154600-01 | Rice | nucleus | 68.53 | 75.92 |
| TraesCS1B01G123100.1 | Wheat | cytosol, nucleus, plasma membrane | 68.12 | 75.81 |
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 67.49 | 75.12 |
| Zm00001d037596_P001 | Maize | nucleus | 77.02 | 65.72 |
| HORVU1Hr1G022130.3 | Barley | nucleus, plastid | 67.91 | 60.41 |
| Zm00001d040789_P001 | Maize | nucleus | 46.58 | 48.6 |
| Bra039430.1-P | Field mustard | cytosol, mitochondrion, nucleus | 14.08 | 47.22 |
| KRH68500 | Soybean | nucleus | 31.88 | 36.93 |
| KRG96789 | Soybean | nucleus | 31.06 | 35.97 |
| KRH33887 | Soybean | nucleus | 32.09 | 35.96 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 21.95 | 35.69 |
| KRG92902 | Soybean | nucleus | 32.3 | 35.54 |
| AT2G47700.1 | Thale cress | nucleus | 26.09 | 35.2 |
| VIT_14s0060g02280.t01 | Wine grape | nucleus | 30.64 | 34.99 |
| PGSC0003DMT400063581 | Potato | nucleus | 30.23 | 34.19 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 28.36 | 32.93 |
| Solyc01g099790.2.1 | Tomato | nucleus | 28.99 | 32.86 |
| VIT_07s0005g00420.t01 | Wine grape | nucleus | 26.71 | 32.49 |
| CDY53013 | Canola | nucleus | 24.22 | 31.79 |
| Bra040540.1-P | Field mustard | nucleus | 27.54 | 31.67 |
| CDY18820 | Canola | nucleus | 27.33 | 31.43 |
| CDX80127 | Canola | nucleus | 24.64 | 31.4 |
| Bra004436.1-P | Field mustard | nucleus | 24.64 | 31.4 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 34.37 | 31.14 |
| CDY40715 | Canola | nucleus | 26.09 | 30.36 |
| AT3G05545.1 | Thale cress | nucleus | 26.5 | 30.12 |
| CDY05177 | Canola | nucleus | 25.67 | 30.02 |
| CDX74141 | Canola | nucleus | 25.26 | 29.4 |
| Bra001153.1-P | Field mustard | nucleus | 25.26 | 29.4 |
| CDY27759 | Canola | endoplasmic reticulum, vacuole | 21.33 | 28.37 |
| CDY27760 | Canola | cytosol | 4.35 | 25.61 |
| Zm00001d031684_P001 | Maize | cytosol | 21.12 | 24.64 |
| Zm00001d052697_P002 | Maize | cytosol | 21.12 | 23.72 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 9.52 | 23.35 |
| CDY64147 | Canola | cytosol | 7.45 | 22.93 |
| CDX89655 | Canola | nucleus | 12.84 | 21.23 |
| CDX93159 | Canola | nucleus | 12.01 | 19.53 |
| Bra013110.1-P | Field mustard | nucleus | 11.8 | 19.26 |
| AT4G13490.1 | Thale cress | cytosol, nucleus, plastid | 8.7 | 18.58 |
| AT2G15260.1 | Thale cress | mitochondrion, nucleus | 11.8 | 15.75 |
| CDY31489 | Canola | cytosol | 10.97 | 15.36 |
| Bra039429.1-P | Field mustard | plastid | 4.35 | 15.11 |
Protein Annotations
| EnsemblPlants:Zm00001d009837_P001 | EnsemblPlants:Zm00001d009837_T001 | EnsemblPlantsGene:Zm00001d009837 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:AQK92791.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0008439BCE | UniProt:A0A1D6FM98 |
| MapMan:19.2.2.1.5.3.3 | : | : | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr8:+:84424231..84443138
Molecular Weight (calculated)
53402.6 Da
IEP (calculated)
6.404
GRAVY (calculated)
-0.680
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVSAEPKEQ AASAAALAVE DEAGGKEDKA AAVSCSICLD AVLAAFGERS TARLHCGHEF HLDCIGSAFN AKGGMQCPNC RKIEKGNWLY ANGFRPAHDV
101: SMDEWAHDED LYDVSYSEMP FRFHWCPFGR LAQLPSLFEE GESSPPITFH DFMGQHVFTE QVAVSAAPGT THPCPYVAYL HPLPPLTSSS SHVPERTTDR
201: TAYHDHWNPM VGPSDVRPMQ TMQPADFHHS HWAHVPHSYA QPNSNNEQPG IPFGTRATRV DGDSQRRISV VSPSYFSNGS RPPSVPPLMP QFMRAHGSIN
301: EQYQQNSSSS LFAGAHRSGG MRPAPTPLPE NPTFSLFPPG SSGHSSMETD DAGGSQFYAW ERDRFAPFPL MPVDCEISWW TSQQQSHSTS EPSSAPRRLF
401: GQWLGVGRSS PENRPPEGSS YRQMMPVDCE TSWWSSQHQS HSTSEPTSAP RRLFGQWLGV SRSSPENRSP EGSSYRQMHS PRM
101: SMDEWAHDED LYDVSYSEMP FRFHWCPFGR LAQLPSLFEE GESSPPITFH DFMGQHVFTE QVAVSAAPGT THPCPYVAYL HPLPPLTSSS SHVPERTTDR
201: TAYHDHWNPM VGPSDVRPMQ TMQPADFHHS HWAHVPHSYA QPNSNNEQPG IPFGTRATRV DGDSQRRISV VSPSYFSNGS RPPSVPPLMP QFMRAHGSIN
301: EQYQQNSSSS LFAGAHRSGG MRPAPTPLPE NPTFSLFPPG SSGHSSMETD DAGGSQFYAW ERDRFAPFPL MPVDCEISWW TSQQQSHSTS EPSSAPRRLF
401: GQWLGVGRSS PENRPPEGSS YRQMMPVDCE TSWWSSQHQS HSTSEPTSAP RRLFGQWLGV SRSSPENRSP EGSSYRQMHS PRM
001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.