CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92902	Soybean	nucleus	92.81	91.12
KRG96789	Soybean	nucleus	82.37	85.13
KRH68500	Soybean	nucleus	81.44	84.17
VIT_14s0060g02280.t01	Wine grape	nucleus	70.77	72.1
PGSC0003DMT400063581	Potato	nucleus	64.27	64.87
Solyc01g099790.2.1	Tomato	nucleus	64.04	64.79
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	19.72	59.03
AT3G05545.1	Thale cress	nucleus	49.19	49.88
CDY40715	Canola	nucleus	47.33	49.16
CDX74141	Canola	nucleus	46.87	48.67
Bra001153.1-P	Field mustard	nucleus	46.87	48.67
CDY05177	Canola	nucleus	46.17	48.18
CDY27759	Canola	endoplasmic reticulum, vacuole	39.68	47.11
CDY18820	Canola	nucleus	45.71	46.9
Bra040540.1-P	Field mustard	nucleus	45.24	46.43
Bra039429.1-P	Field mustard	plastid	12.99	40.29
GSMUA_Achr2P02250_001	Banana	nucleus	25.75	37.37
CDY27760	Canola	cytosol	6.96	36.59
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	36.66	36.41
Os05t0154600-01	Rice	nucleus	36.66	36.24
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	36.43	36.18
EES19051	Sorghum	nucleus	36.19	35.7
GSMUA_Achr5P27050_001	Banana	nucleus	33.87	35.1
TraesCS1A01G095100.1	Wheat	cytosol	31.79	35.04
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	35.96	32.09
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	33.18	31.43
KXG32474	Sorghum	nucleus	32.02	30.2
Zm00001d040789_P001	Maize	nucleus	30.86	28.73
GSMUA_Achr8P06630_001	Banana	nucleus	35.27	28.52
HORVU1Hr1G022130.3	Barley	nucleus, plastid	35.73	28.36
Zm00001d037596_P001	Maize	nucleus	35.5	27.03

Protein Annotations

EMBL:ACUP02006564	EnsemblPlants:KRH33887	EnsemblPlantsGene:GLYMA_10G151500	EntrezGene:100798107	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639
PFscan:PS50089	ProteinID:KRH33887	ProteinID:KRH33887.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000233C942	UniProt:I1LBA0	MapMan:19.2.2.1.5.3.3	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:38650989..38659798

Molecular Weight (calculated)

47057.6 Da

IEP (calculated)

6.572

GRAVY (calculated)

-0.690

Length

431 amino acids

Sequence
(BLAST)

001: MGLGNDEEED NNNNDKVVDD GDVGGGKSFG SVSCSICLEV VADNGDRSWS KLQCGHQFHL DCIGSAFNIK GAMQCPNCRK IEKGQWLYAN GCRSYPEFSM
101: DEWTHDEDLY DLSYSEMSFG VHWCPFGNLA RLPSSFEEGE FSSSAYHDVL GQHAIFAEHT AVSSASHPCP YIAYFGPIHP SSSNSGGTVS EASNFNHWNG
201: SSVPSDMPTS YTFPAVDLHY RSWEHHSPPF STASSRLVAA DQPSVSPGSQ RPARGGSDVP RSGSFMHPFL VGHSSAARAG SSVASSMIPP YPGSNARARD
301: RVQALQAYYQ PQQPPNSTTM RTPIASGTRR SSSHNGPAQL APMATSPDQG GGFFLIPSSS SGRNFQEENH HLPNHFHAWE RDHLPSLSLN HVDRDSGWRA
401: YHQATSRSDP ATRSSSFRLR HGSDRMPSQN R

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.