Factsheet for Bra040540.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18820	Canola	nucleus	99.29	99.29
AT3G05545.1	Thale cress	nucleus	79.05	78.12
Bra001153.1-P	Field mustard	nucleus	75.71	76.63
Bra039429.1-P	Field mustard	plastid	23.81	71.94
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	22.62	65.97
VIT_14s0060g02280.t01	Wine grape	nucleus	47.62	47.28
KRH68500	Soybean	nucleus	45.48	45.8
KRG92902	Soybean	nucleus	47.86	45.79
KRG96789	Soybean	nucleus	45.24	45.56
KRH33887	Soybean	nucleus	46.43	45.24
Solyc01g099790.2.1	Tomato	nucleus	45.0	44.37
PGSC0003DMT400063581	Potato	nucleus	44.76	44.03
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	34.52	33.41
GSMUA_Achr2P02250_001	Banana	nucleus	23.33	33.0
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	34.05	32.95
EES19051	Sorghum	nucleus	33.1	31.81
TraesCS1A01G095100.1	Wheat	cytosol	29.29	31.46
Bra004436.1-P	Field mustard	nucleus	28.1	31.13
Os05t0154600-01	Rice	nucleus	31.9	30.73
GSMUA_Achr5P27050_001	Banana	nucleus	30.24	30.53
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	30.24	27.91
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	31.67	27.54
KXG32474	Sorghum	nucleus	29.29	26.91
Zm00001d040789_P001	Maize	nucleus	28.33	25.7
HORVU1Hr1G022130.3	Barley	nucleus, plastid	32.86	25.41
Zm00001d037596_P001	Maize	nucleus	32.38	24.03
Bra013110.1-P	Field mustard	nucleus	16.9	23.99
GSMUA_Achr8P06630_001	Banana	nucleus	30.0	23.64

Protein Annotations

EnsemblPlants:Bra040540.1	EnsemblPlants:Bra040540.1-P	EnsemblPlantsGene:Bra040540	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000253EDA6	UniProt:M4FHG2	MapMan:19.2.2.1.5.3.3

Description

AT3G05545 (E=4e-147) | transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein

Coordinates

chrScaffold000215:-:71756..74190

Molecular Weight (calculated)

45386.8 Da

IEP (calculated)

6.350

GRAVY (calculated)

-0.643

Length

420 amino acids

Sequence
(BLAST)

001: MGLGNNATKF DFDANDLAAD DSSDGDSIDE VNAFGSVLCS ICIETVTKEG DRAWAKLHCG HEFHLDCIGS AFNTKGVMQC PNCRKVEKGQ WLYANGCRSN
101: PEFSAEEWVH EEDIYDIGTY SELAFRVHWC PFGSSARLPS FEDGEFSPSS YQELLGQQGY FTEPAAPTAG HPCPYVTYFG PVHSSSSSSG GSDTSSFPSH
201: WNTSGSSEVP PPYGFPVDPH FHGWDYHSPP PPPPQHFSAA SGAHVGSPTH PTPPPAAART FRANGSDVIR PRPPHFIRPS YHGHSSGGRA GSSVASIPRS
301: PLFPGSNVRT RDRMQALQAY HQQSSAQSHQ PDSPIVSHGP VFSSGRRPSR ASLMGGSTSS SSDQAGGSGF IRFNIWEREP YMQLQPAYPV NQMDREPPSL
401: WTFNEGSGSL HQRHGAGGSS

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.