Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0819400-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47700.1 | Os01t0819400-00 | AT3G08690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0154600-01 | Rice | nucleus | 62.2 | 64.91 |
| Zm00001d040789_P001 | Maize | nucleus | 55.6 | 54.64 |
| KXG32474 | Sorghum | nucleus | 53.63 | 53.39 |
| Bra039430.1-P | Field mustard | cytosol, mitochondrion, nucleus | 14.07 | 44.44 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 31.87 | 34.86 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 21.98 | 33.67 |
| VIT_14s0060g02280.t01 | Wine grape | nucleus | 31.21 | 33.57 |
| KRH68500 | Soybean | nucleus | 30.55 | 33.33 |
| PGSC0003DMT400063581 | Potato | nucleus | 31.21 | 33.26 |
| KRH33887 | Soybean | nucleus | 31.43 | 33.18 |
| KRG96789 | Soybean | nucleus | 30.33 | 33.09 |
| KRG92902 | Soybean | nucleus | 31.87 | 33.03 |
| VIT_07s0005g00420.t01 | Wine grape | nucleus | 28.35 | 32.49 |
| Solyc01g099790.2.1 | Tomato | nucleus | 30.33 | 32.39 |
| AT2G47700.1 | Thale cress | nucleus | 25.05 | 31.84 |
| Bra040540.1-P | Field mustard | nucleus | 27.91 | 30.24 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 35.38 | 30.21 |
| CDY53013 | Canola | nucleus | 24.4 | 30.16 |
| CDY18820 | Canola | nucleus | 27.69 | 30.0 |
| CDY05177 | Canola | nucleus | 27.03 | 29.78 |
| CDY40715 | Canola | nucleus | 27.03 | 29.64 |
| AT3G05545.1 | Thale cress | nucleus | 27.25 | 29.18 |
| Bra001153.1-P | Field mustard | nucleus | 26.59 | 29.16 |
| CDX74141 | Canola | nucleus | 26.59 | 29.16 |
| CDX80127 | Canola | nucleus | 24.18 | 29.02 |
| Bra004436.1-P | Field mustard | nucleus | 24.18 | 29.02 |
| CDY27759 | Canola | endoplasmic reticulum, vacuole | 22.42 | 28.1 |
| CDY27760 | Canola | cytosol | 4.4 | 24.39 |
| Os08t0539300-01 | Rice | nucleus | 21.76 | 23.35 |
| CDY64147 | Canola | cytosol | 7.91 | 22.93 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 9.67 | 22.34 |
| CDX89655 | Canola | nucleus | 14.29 | 22.26 |
| Os09t0511500-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 18.24 | 20.54 |
| CDX93159 | Canola | nucleus | 13.41 | 20.54 |
| Bra013110.1-P | Field mustard | nucleus | 12.75 | 19.59 |
| Bra039429.1-P | Field mustard | plastid | 5.71 | 18.7 |
| AT4G13490.1 | Thale cress | cytosol, nucleus, plastid | 8.79 | 17.7 |
| CDY31489 | Canola | cytosol | 12.31 | 16.23 |
| AT2G15260.1 | Thale cress | mitochondrion, nucleus | 12.31 | 15.47 |
Protein Annotations
| EMBL:AK070217 | EnsemblPlants:Os01t0350900-02 | EnsemblPlantsGene:Os01g0350900 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:BAD52927.1 | ProteinID:BAD53853.1 | ProteinID:BAS72030.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0000446BD1 | UniProt:Q5Z8R1 | MapMan:19.2.2.1.5.3.3 | : | : | : |
Description
IPA1 INTERACTING PROTEIN1Similar to VIP2 protein. (Os01t0350900-01);RING-finger E3 ligase, Regulation of plant architecture (Os01t0350900-02)
Coordinates
chr1:+:14012515..14019465
Molecular Weight (calculated)
48897.0 Da
IEP (calculated)
4.904
GRAVY (calculated)
-0.665
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAEEEEEPA SAVGREGGGG GGGARAAGAG AGGDTADDDD SGESAAAVVP CSICLDAVVA GGGDRSTARL QCGHEFHLDC IGSAFNAKGV MQCPNCRQIE
101: RGNWLYANGS RPSQDVSNDD WGHDEDFYDA NQPETSRSVF LPFRFQWCPI GRLAQLPSVF DEGESAPPVT FHDFMGQNFT SEHLPVSAPG ATPPGPYIAY
201: FQPLQSSASS SSSHVTERTM DGTTYHDHWN PLPGPSDGRP LATVHPIDFH HNHWTHLPNS YSQPNSNNGV AEQMAIPVVP MRVGGLDSDS QQRGSLPSVY
301: GNGSGSRSRI PSVPPMAPQF MRPHGNINEQ YQQNSSSLYA APQRRTAVQA VQDSMNFTLF PQAPTGPNSM ETEDAGGNQF YAWERDRFAP YPLMPVDSEA
401: NWWGSTPQSH GVTDHSAAPG RRLFGQWIGA GRSPPPPPPP PADNSSYRQM HIPRM
101: RGNWLYANGS RPSQDVSNDD WGHDEDFYDA NQPETSRSVF LPFRFQWCPI GRLAQLPSVF DEGESAPPVT FHDFMGQNFT SEHLPVSAPG ATPPGPYIAY
201: FQPLQSSASS SSSHVTERTM DGTTYHDHWN PLPGPSDGRP LATVHPIDFH HNHWTHLPNS YSQPNSNNGV AEQMAIPVVP MRVGGLDSDS QQRGSLPSVY
301: GNGSGSRSRI PSVPPMAPQF MRPHGNINEQ YQQNSSSLYA APQRRTAVQA VQDSMNFTLF PQAPTGPNSM ETEDAGGNQF YAWERDRFAP YPLMPVDSEA
401: NWWGSTPQSH GVTDHSAAPG RRLFGQWIGA GRSPPPPPPP PADNSSYRQM HIPRM
001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.