Factsheet for Os08t0539300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80800	Sorghum	nucleus	76.65	76.11
TraesCS7D01G266300.1	Wheat	cytosol	74.76	73.72
TraesCS7B01G163800.1	Wheat	cytosol	74.29	73.26
TraesCS7A01G268500.1	Wheat	cytosol	73.58	72.9
Zm00001d031684_P001	Maize	cytosol	66.04	67.63
Zm00001d052697_P002	Maize	cytosol	67.45	66.51
Os09t0511500-01	Rice	cytosol, endoplasmic reticulum, nucleus	40.57	42.57
GSMUA_AchrUn_...	Banana	nucleus	38.68	37.53
GSMUA_Achr8P17170_001	Banana	vacuole	21.7	27.38
GSMUA_Achr8P17150_001	Banana	cytosol, golgi, nucleus, plastid	12.26	23.11
Os05t0154600-01	Rice	nucleus	23.58	22.94
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	23.35	21.76

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	EntrezGene:4346180	ProteinID:BAD33143.1	ProteinID:BAF24290.1	ProteinID:BAT06472.1
ProteinID:EEE69078.1	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os08g0539300	EnsemblPlants:Os08t0539300-01	PFAM:PF13639
PFscan:PS50089	PFscan:PS51257	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	UniProt:Q69UA1	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0000212FCE	RefSeq:XP_015650650.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RING finger protein OsRFPH2-10, RING-H2 protein 10, RING-H2 Finger E3 Ubiquitin Ligase 10Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0539300-01)

Coordinates

chr8:+:26948601..26953317

Molecular Weight (calculated)

45912.2 Da

IEP (calculated)

7.271

GRAVY (calculated)

-0.626

Length

424 amino acids

Sequence
(BLAST)

001: MDLERSPPPP PPEGGGGGGG GGASCSICLD PVVAGGRSVA RLQCGHEFHL DCIGSAFNAK GAMQCPNCRK IEKGRWLYAS GHHPSPDIDI GGWVTGETYD
101: ITSDIPFGFQ WCPFSGFTQL ASVFEEGEAE QTSYHTVGDH SNAASSSLVC PYLALRGFLH PVHVPSSSSS GAENSSFHRH PTSLEGHAAH DLSNTQVFHA
201: TESRNHDNDH RYMSNLPVSG IPDHSVAPFG IGLPRYDSSS QQRTRPYAHH RPLVHRPTPR NGSNMVTPLG SVPAVMAETR GHGHGARGHM YQQSMHSLQS
301: SPFPPTSRRV RPRALTITSF IAASSSAEIG GHHGFAPPVN RSNSSDGEAV SRPVDRPYGW GQEGFTPFPW IPADGESHWW GTFNPMQNHT HGGFTRRPTG
401: ERMPQSHPDS GYHSMHPQRM PPFL

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.