Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G268500.1 | Wheat | cytosol | 96.98 | 97.43 |
| TraesCS7B01G163800.1 | Wheat | cytosol | 96.98 | 96.98 |
| Os08t0539300-01 | Rice | nucleus | 73.72 | 74.76 |
| OQU80800 | Sorghum | nucleus | 71.16 | 71.66 |
| Zm00001d031684_P001 | Maize | cytosol | 65.12 | 67.63 |
| Zm00001d052697_P002 | Maize | cytosol | 64.65 | 64.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.74 | 36.16 |
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 26.98 | 26.73 |
| GSMUA_Achr8P17170_001 | Banana | vacuole | 19.77 | 25.3 |
| GSMUA_Achr8P17150_001 | Banana | cytosol, golgi, nucleus, plastid | 13.02 | 24.89 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G266300.1 | EnsemblPlantsGene:TraesCS7D01G266300 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16448 | MapMan:19.2.2.1.5.3.3 | : | : |
Description
No Description!
Coordinates
chr7D:+:249368711..249373785
Molecular Weight (calculated)
46272.3 Da
IEP (calculated)
7.320
GRAVY (calculated)
-0.430
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLERSPPPD HAAEAAGGGA CSICLDPVAG RAGGRSIAKL QCGHEFHLDC IGSAFNAKGA MQCPNCRKIE KGRWLYATGQ RPSPDIDIGG WVTGETYDIA
101: SDLPFGFQWC PFNGFTQLAS VFEEGEAEPP SYHTVADHSS AASSSLVCPY LSLRGFLHPV HVPLGSNSGA EGASFHRHPT SLEGHAAPDL GNTQAAFHAT
201: EPRILDSEHR YLTNLPVSGI PDHSVAPFGI GLPRYETSSQ QRSRPYVHHH PLVHRPTPRN GSNLVAPLGS VPAVMGETRG HGHGARGHMY QHSMHASMQG
301: SPFPPTARRV RPRALTITSF IAAAAASSAE VGVLHGFAPP AAVNRSLPSD GEGVSRPPVD RPYAWGREGF GPFPWVPVDG EPHWWSTFNP MQNHTHGGFT
401: RRPAPGERIL QSHPDNVYQP VPPQRMPPFL
101: SDLPFGFQWC PFNGFTQLAS VFEEGEAEPP SYHTVADHSS AASSSLVCPY LSLRGFLHPV HVPLGSNSGA EGASFHRHPT SLEGHAAPDL GNTQAAFHAT
201: EPRILDSEHR YLTNLPVSGI PDHSVAPFGI GLPRYETSSQ QRSRPYVHHH PLVHRPTPRN GSNLVAPLGS VPAVMGETRG HGHGARGHMY QHSMHASMQG
301: SPFPPTARRV RPRALTITSF IAAAAASSAE VGVLHGFAPP AAVNRSLPSD GEGVSRPPVD RPYAWGREGF GPFPWVPVDG EPHWWSTFNP MQNHTHGGFT
401: RRPAPGERIL QSHPDNVYQP VPPQRMPPFL
001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.