Factsheet for TraesCS1D01G103800.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G301600.1
TraesCS1B01G311400.1
TraesCS1D01G301300.1
TraesCS3A01G342500.1
TraesCS3B01G374500.1
TraesCS3D01G336300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47700.1	TraesCS1A01G301600.1	AT3G08690.1	21798944
AT2G47700.1	TraesCS1B01G311400.1	AT3G08690.1	21798944
AT2G47700.1	TraesCS1D01G301300.1	AT3G08690.1	21798944
AT2G47700.1	TraesCS3A01G342500.1	AT3G08690.1	21798944
AT2G47700.1	TraesCS3B01G374500.1	AT3G08690.1	21798944
AT2G47700.1	TraesCS3D01G336300.1	AT3G08690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	99.08	99.08
TraesCS1A01G095100.1	Wheat	cytosol	87.56	97.19
Os05t0154600-01	Rice	nucleus	83.18	82.8
EES19051	Sorghum	nucleus	77.65	77.12
HORVU1Hr1G022130.3	Barley	nucleus, plastid	92.4	73.85
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	75.12	67.49
Zm00001d037596_P001	Maize	nucleus	75.58	57.95
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	16.82	50.69
KRH68500	Soybean	nucleus	36.18	37.65
GSMUA_Achr2P02250_001	Banana	nucleus	25.58	37.37
KRG96789	Soybean	nucleus	35.71	37.17
KRH33887	Soybean	nucleus	36.41	36.66
GSMUA_Achr5P27050_001	Banana	nucleus	34.79	36.3
KRG92902	Soybean	nucleus	36.18	35.76
VIT_14s0060g02280.t01	Wine grape	nucleus	34.56	35.46
PGSC0003DMT400063581	Potato	nucleus	34.79	35.36
AT2G47700.1	Thale cress	nucleus	29.03	35.2
Solyc01g099790.2.1	Tomato	nucleus	34.33	34.98
Bra040540.1-P	Field mustard	nucleus	33.41	34.52
VIT_07s0005g00420.t01	Wine grape	nucleus	31.57	34.51
CDY18820	Canola	nucleus	33.18	34.29
CDY40715	Canola	nucleus	31.57	33.01
Bra001153.1-P	Field mustard	nucleus	31.57	33.01
CDX74141	Canola	nucleus	31.57	33.01
AT3G05545.1	Thale cress	nucleus	32.26	32.94
CDY53013	Canola	nucleus	27.88	32.88
GSMUA_Achr8P06630_001	Banana	nucleus	40.32	32.83
CDY05177	Canola	nucleus	30.88	32.45
Bra004436.1-P	Field mustard	nucleus	27.65	31.66
CDX80127	Canola	nucleus	27.65	31.66
CDY27759	Canola	endoplasmic reticulum, vacuole	25.81	30.85
TraesCS7D01G266300.1	Wheat	cytosol	26.73	26.98
CDY27760	Canola	cytosol	5.07	26.83
CDY64147	Canola	cytosol	9.68	26.75
CDX85292	Canola	cytosol, golgi, peroxisome	11.52	25.38
CDX89655	Canola	nucleus	14.52	21.58
AT4G13490.1	Thale cress	cytosol, nucleus, plastid	10.37	19.91
CDX93159	Canola	nucleus	13.59	19.87
Bra039429.1-P	Field mustard	plastid	6.22	19.42
Bra013110.1-P	Field mustard	nucleus	13.13	19.26
CDY31489	Canola	cytosol	14.06	17.68
AT2G15260.1	Thale cress	mitochondrion, nucleus	13.36	16.02

Protein Annotations

EnsemblPlants:TraesCS1D01G103800.1	EnsemblPlantsGene:TraesCS1D01G103800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16448	MapMan:19.2.2.1.5.3.3	:	:

Description

No Description!

Coordinates

chr1D:-:93123799..93130409

Molecular Weight (calculated)

47544.8 Da

IEP (calculated)

6.246

GRAVY (calculated)

-0.686

Length

434 amino acids

Sequence
(BLAST)

001: MGAGAEPREE EPLEAEEGSG GKEEKAAVSC SICLDAVVAA SAERSMARLQ CGHEFHLDCI GSAFNAKGVM QCPNCRKIEK GNWLYANGSR PSHDINMDEW
101: AHEEDLYDVS YSEMPFRFHW CPFGRLAQLP SFFEEGESPP PVTFHDFMGQ HVFPENLSVS AAPGAHPCPY VAYLHPLPSL ASSSSSHVPE RTMDGSAYHD
201: HWNHLAGPSD GRPLQTVPPT DFHHNHWAHL PHSYVQSNSN NGVTEQPGVP FGSMRAARVD GDSQRRGSVV SPSYFSNGSG SRSRAPNVPP LVPQFMRAHG
301: NINEQYTQSS SSSLFAGAHR SGGMRPAPPP PQPENPTFCL FPPGSSGHSS MDTDEAGGSR FYAWERDRFA PYPLMPVDCE TSWWSSQQSH GASESTPAPA
401: PRRLFGQWIG LGRSSPENRS PEGSSYRQMH SPRM

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.