Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G060800.1 | |
| TraesCS4B01G236200.1 | |
| TraesCS4D01G237600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G08690.1 | TraesCS4A01G060800.1 | AT3G49810.1 | 21798944 |
| AT3G08690.1 | TraesCS4B01G236200.1 | AT3G49810.1 | 21798944 |
| AT3G08690.1 | TraesCS4D01G237600.1 | AT3G49810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G301600.1 | Wheat | cytosol, nucleus, peroxisome | 100.0 | 100.0 |
| TraesCS3B01G374500.1 | Wheat | cytosol, nucleus, peroxisome | 99.32 | 99.32 |
| EES19701 | Sorghum | cytosol | 98.65 | 98.65 |
| AT3G08690.1 | Thale cress | cytosol | 94.59 | 94.59 |
| TraesCS2B01G570100.1 | Wheat | cytosol | 94.59 | 94.59 |
| Bra001347.1-P | Field mustard | cytosol | 93.92 | 93.92 |
| Bra041101.1-P | Field mustard | cytosol | 93.24 | 93.24 |
| Os01t0819400-00 | Rice | cytosol | 99.32 | 93.04 |
| TraesCS7B01G239300.1 | Wheat | cytosol, nucleus, peroxisome | 92.57 | 92.57 |
| TraesCS3B01G266900.1 | Wheat | cytosol | 90.54 | 91.16 |
| Zm00001d010618_P003 | Maize | cytosol | 98.65 | 89.57 |
| TraesCS5B01G174300.1 | Wheat | cytosol | 86.49 | 86.49 |
| TraesCS6B01G095200.1 | Wheat | cytosol | 86.49 | 85.91 |
| HORVU1Hr1G069530.1 | Barley | cytosol, plastid | 100.0 | 69.48 |
| TraesCS3B01G305500.1 | Wheat | mitochondrion | 48.65 | 47.06 |
| TraesCS5B01G179700.1 | Wheat | cytosol | 47.97 | 46.41 |
| Bra029711.1-P | Field mustard | nucleus | 91.89 | 43.87 |
| TraesCS2B01G270000.2 | Wheat | nucleus | 43.92 | 42.76 |
| TraesCS5B01G431100.1 | Wheat | mitochondrion, nucleus | 43.92 | 42.76 |
| GSMUA_Achr5P04210_001 | Banana | cytosol | 48.65 | 42.6 |
| TraesCS3B01G131500.2 | Wheat | nucleus | 43.24 | 42.11 |
| TraesCS1B01G140300.1 | Wheat | mitochondrion | 41.89 | 40.79 |
| TraesCS2B01G220200.1 | Wheat | plastid | 52.7 | 40.62 |
| TraesCS1B01G420600.1 | Wheat | vacuole | 44.59 | 32.2 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G311400.1 | EnsemblPlantsGene:TraesCS1B01G311400 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF55 | PFAM:PF00179 | PFscan:PS50127 |
| ScanProsite:PS00183 | SMART:SM00212 | SUPFAM:SSF54495 | TIGR:cd00195 | MapMan:19.2.2.5.2 | : |
Description
No Description!
Coordinates
chr1B:-:534669682..534671767
Molecular Weight (calculated)
16507.9 Da
IEP (calculated)
8.068
GRAVY (calculated)
-0.376
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKRILKEL KDLQKDPPTS CSAGPAGEDM FHWQATIMGP PDSPYAGGVF LVNIHFPPDY PFKPPKVSFK TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYETTARS WTQKYAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYETTARS WTQKYAMG
001: MASKRILKEL KDLQKDPPSN CSAGPVAEDM FHWQATIMGP PESPYAGGVF LVSIHFPPDY PFKPPKVSFK TKVYHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYESTARS WTQKYAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYESTARS WTQKYAMG
Arabidopsis Description
UBC11Ubiquitin-conjugating enzyme E2 11 [Source:UniProtKB/Swiss-Prot;Acc:P35134]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.