Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G187000.1 | Wheat | plastid | 94.79 | 95.79 |
| Zm00001d021904_P001 | Maize | plastid | 86.46 | 90.22 |
| EER97436 | Sorghum | plastid | 84.38 | 86.63 |
| Os07t0577400-01 | Rice | nucleus | 83.85 | 79.7 |
| GSMUA_Achr4P22180_001 | Banana | cytosol | 56.25 | 77.7 |
| VIT_06s0004g00730.t01 | Wine grape | plastid | 65.1 | 71.02 |
| KRH42820 | Soybean | plastid | 60.94 | 66.48 |
| Solyc01g005840.2.1 | Tomato | plastid | 60.42 | 64.09 |
| AT3G13550.1 | Thale cress | mitochondrion | 57.29 | 60.44 |
| Bra027422.1-P | Field mustard | plastid | 56.25 | 59.02 |
| CDY59253 | Canola | mitochondrion | 56.25 | 59.02 |
| CDY23617 | Canola | plastid | 56.25 | 59.02 |
| TraesCS5B01G174300.1 | Wheat | cytosol | 41.67 | 54.05 |
| TraesCS3B01G266900.1 | Wheat | cytosol | 41.15 | 53.74 |
| TraesCS1B01G311400.1 | Wheat | cytosol, nucleus, peroxisome | 40.62 | 52.7 |
| TraesCS3B01G374500.1 | Wheat | cytosol, nucleus, peroxisome | 40.62 | 52.7 |
| TraesCS2B01G570100.1 | Wheat | cytosol | 40.1 | 52.03 |
| TraesCS7B01G239300.1 | Wheat | cytosol, nucleus, peroxisome | 39.58 | 51.35 |
| TraesCS6B01G095200.1 | Wheat | cytosol | 38.54 | 49.66 |
| TraesCS3B01G305500.1 | Wheat | mitochondrion | 32.81 | 41.18 |
| TraesCS5B01G179700.1 | Wheat | cytosol | 31.77 | 39.87 |
| TraesCS1B01G140300.1 | Wheat | mitochondrion | 23.96 | 30.26 |
| TraesCS5B01G431100.1 | Wheat | mitochondrion, nucleus | 23.96 | 30.26 |
| TraesCS2B01G270000.2 | Wheat | nucleus | 23.44 | 29.61 |
| TraesCS3B01G131500.2 | Wheat | nucleus | 23.44 | 29.61 |
| TraesCS1B01G420600.1 | Wheat | vacuole | 30.73 | 28.78 |
Protein Annotations
| MapMan:19.2.2.8.3.3.1 | Gene3D:3.10.110.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0010099 | InterPro:IPR000608 |
| InterPro:IPR016135 | PFAM:PF00179 | PFscan:PS50127 | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF41 | SMART:SM00212 |
| SUPFAM:SSF54495 | EnsemblPlantsGene:TraesCS2B01G220200 | EnsemblPlants:TraesCS2B01G220200.1 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | TIGR:cd00195 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:210663204..210665837
Molecular Weight (calculated)
20276.0 Da
IEP (calculated)
8.205
GRAVY (calculated)
-0.020
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSSFLGS RFPFAAVGAG AGASGGSGAG GSGSSVRPWG SSGGTSVSSS GKRIQKELLD LNASDCSAGP KGDNLYHWLS TIIGPQGSPY DGGIFFLDIV
101: FPLDYPFKPP MVTFKTRIYH CNVDSTGAVS LEILKDGWSP ALTISKVLLA IKAIITNPDP YNPLVESIAR LYLTDRAKHD EIAAEWTLRF AR
101: FPLDYPFKPP MVTFKTRIYH CNVDSTGAVS LEILKDGWSP ALTISKVLLA IKAIITNPDP YNPLVESIAR LYLTDRAKHD EIAAEWTLRF AR
001: MMTPGGSGRL RPLPTAMYAG YSGTASSWVA KTSVSASGKR IQREMAELNI DPPPDCSAGP KGDNLYHWIA TIIGPSGTPY EGGIFFLDII FPSDYPFKPP
101: KLVFKTRIYH CNVDTAGDLS VNILRDSWSP ALTITKVLQA IRSIFLKPEP YSPALPVIAR LYLTDREKHD EVAKEWTLRF AK
101: KLVFKTRIYH CNVDTAGDLS VNILRDSWSP ALTITKVLQA IRSIFLKPEP YSPALPVIAR LYLTDREKHD EVAKEWTLRF AK
Arabidopsis Description
COP10FUS9 [Source:UniProtKB/TrEMBL;Acc:A0A178VI85]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.