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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 1
  • plastid 2
  • mitochondrion 5
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70553
CDX71533
CDX77644
CDX78568
CDX78656
CDX85608
CDX87735
CDX90747
CDX91076
CDY01192
CDY02426
CDY03235
CDY05087
CDY12145
CDY12369
CDY12734
CDY22374
CDY26433
CDY27125
CDY33461
CDY35152
CDY43957
CDY52540
CDY61016
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G13550.1 CDY12145 AT2G32950.1 11877375
AT3G13550.1 CDY52540 AT2G32950.1 11877375
AT3G13550.1 CDY12145 AT2G32950.1 18552200
AT3G13550.1 CDY52540 AT2G32950.1 18552200
AT3G13550.1 CDY68484 AT4G05420.1 16844902
AT3G13550.1 CDY69266 AT4G05420.1 16844902
AT3G13550.1 CDY69930 AT4G05420.1 16844902
AT3G13550.1 CDY70585 AT4G05420.1 16844902
AT3G13550.1 CDY68484 AT4G05420.1 18552200
AT3G13550.1 CDY69266 AT4G05420.1 18552200
AT3G13550.1 CDY69930 AT4G05420.1 18552200
AT3G13550.1 CDY70585 AT4G05420.1 18552200
AT3G13550.1 CDX90747 AT4G10180.1 16844902
AT3G13550.1 CDY05087 AT4G10180.1 16844902
AT3G13550.1 CDX90747 AT4G10180.1 18552200
AT3G13550.1 CDY05087 AT4G10180.1 18552200
AT3G13550.1 CDY01192 AT4G14110.1 11877375
AT3G13550.1 CDY12369 AT4G14110.1 11877375
AT3G13550.1 CDY12734 AT4G14110.1 11877375
AT3G13550.1 CDY27125 AT4G14110.1 11877375
AT3G13550.1 CDX70553 AT5G14250.1 11877375
AT3G13550.1 CDX78568 AT5G14250.1 11877375
AT3G13550.1 CDX78656 AT5G14250.1 11877375
AT3G13550.1 CDX85608 AT5G14250.1 11877375
AT3G13550.1 CDX91076 AT5G14250.1 11877375
AT3G13550.1 CDY26433 AT5G14250.1 11877375
AT3G13550.1 CDX71533 AT5G42970.1 11877375
AT3G13550.1 CDY02426 AT5G42970.1 11877375
AT3G13550.1 CDY22374 AT5G42970.1 11877375
AT3G13550.1 CDY61016 AT5G42970.1 11877375
AT3G13550.1 CDX77644 AT5G46210.1 16844902
AT3G13550.1 CDX87735 AT5G46210.1 16844902
AT3G13550.1 CDY03235 AT5G46210.1 16844902
AT3G13550.1 CDY33461 AT5G46210.1 16844902
AT3G13550.1 CDY35152 AT5G46210.1 16844902
AT3G13550.1 CDY43957 AT5G46210.1 16844902
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra027422.1-P Field mustard plastid 98.91 98.91
CDY23617 Canola plastid 97.27 97.27
AT3G13550.1 Thale cress mitochondrion 91.26 91.76
VIT_06s0004g00730.t01 Wine grape plastid 67.76 70.45
GSMUA_Achr4P22180_001 Banana cytosol 52.46 69.06
KRH42820 Soybean plastid 65.03 67.61
Solyc01g005840.2.1 Tomato plastid 62.84 63.54
TraesCS2A01G187000.1 Wheat plastid 60.11 57.89
TraesCS2B01G220200.1 Wheat plastid 59.02 56.25
Zm00001d021904_P001 Maize plastid 54.64 54.35
EER97436 Sorghum plastid 55.19 54.01
Os07t0577400-01 Rice nucleus 59.56 53.96
CDX89747 Canola cytosol 41.53 51.35
CDY02238 Canola cytosol 40.44 50.0
CDX76970 Canola cytosol 39.89 49.32
CDY51965 Canola cytosol 39.89 49.32
CDY17396 Canola cytosol 39.34 48.65
CDY34409 Canola cytosol 38.8 47.97
CDY25571 Canola cytosol 38.8 47.97
CDY31408 Canola cytosol 38.25 47.3
CDX71304 Canola cytosol, mitochondrion, nucleus 37.7 46.62
CDY35636 Canola cytosol 37.7 46.62
CDY14388 Canola cytosol 37.7 46.62
CDY37098 Canola cytosol 27.87 45.95
CDY47067 Canola cytosol 37.16 45.95
CDX73346 Canola cytosol 27.87 45.95
CDX96210 Canola cytosol 37.16 45.95
CDY49174 Canola cytosol 37.16 45.95
CDY23674 Canola cytosol 27.32 45.05
CDY08368 Canola cytosol 38.8 44.65
CDY68877 Canola cytosol, mitochondrion 38.8 44.38
CDY06521 Canola cytosol, plastid 38.8 44.38
CDY11958 Canola cytosol 38.8 41.04
CDY39254 Canola cytosol 25.68 40.52
CDY54372 Canola cytosol 32.24 38.56
CDY40025 Canola cytosol 32.24 38.56
CDX83936 Canola cytosol 32.24 38.56
CDY38184 Canola cytosol 37.7 38.33
CDX88485 Canola cytosol 31.69 37.91
CDX81788 Canola cytosol 31.69 37.91
CDX87428 Canola cytosol 31.69 37.91
CDY35126 Canola cytosol 31.69 37.91
CDY14587 Canola cytosol 31.69 37.66
CDY57941 Canola cytosol 31.69 37.42
CDX96802 Canola cytosol 31.15 37.25
CDY54342 Canola cytosol 37.16 36.96
CDY26882 Canola cytosol 28.42 35.86
CDX79272 Canola cytosol 32.79 35.29
CDY65274 Canola cytosol 27.32 34.25
CDY38761 Canola mitochondrion 28.42 34.21
CDY11654 Canola mitochondrion 28.42 34.21
CDY06520 Canola cytosol 28.96 34.19
CDY39315 Canola mitochondrion 27.87 33.55
CDY36778 Canola cytosol 39.34 33.18
CDY66232 Canola mitochondrion, nucleus 26.23 32.0
CDY30726 Canola mitochondrion, nucleus 26.23 32.0
CDY03040 Canola mitochondrion, nucleus 24.04 31.21
CDX84034 Canola nucleus 16.94 28.97
CDY68969 Canola mitochondrion 20.22 25.52
CDX96859 Canola mitochondrion 25.14 24.34
CDX73344 Canola cytosol 20.77 23.17
Protein Annotations
EnsemblPlants:CDY59253EnsemblPlantsGene:GSBRNA2T00025769001Gene3D:3.10.110.10InterPro:IPR000608InterPro:IPR016135InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWDPANTHER:PTHR24068PANTHER:PTHR24068:SF41PFAM:PF00179PFscan:PS50127ProteinID:CDY59253
ProteinID:CDY59253.1SMART:SM00212SUPFAM:SSF54495UniParc:UPI0004EE9906UniProt:A0A078J506MapMan:19.2.2.8.3.3.1
Description
BnaA05g37000DBnaA05g37000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J506]
Coordinates
chrLK033744:+:26584..28058
Molecular Weight (calculated)
20273.4 Da
IEP (calculated)
9.294
GRAVY (calculated)
-0.214
Length
183 amino acids
Sequence
(BLAST)
001: MMTTPGGSGR FKPLPTAMYA GYSGTASSWV AKTSVSASGK RIQREMAELN VDPPPECSAG PKGDNLYHWI ATIIGPSGTP YEGGIFFLDM IFPSDYPFKP
101: PKVVFKTRIY HCNVDASGNL SVEILRDSWS PALTITKVLQ AIRSIFLKPE TYNPALPVIA RLYLSDREKH EEVAKEWTLR FAK
Best Arabidopsis Sequence Match ( AT3G13550.1 )
(BLAST)
001: MMTPGGSGRL RPLPTAMYAG YSGTASSWVA KTSVSASGKR IQREMAELNI DPPPDCSAGP KGDNLYHWIA TIIGPSGTPY EGGIFFLDII FPSDYPFKPP
101: KLVFKTRIYH CNVDTAGDLS VNILRDSWSP ALTITKVLQA IRSIFLKPEP YSPALPVIAR LYLTDREKHD EVAKEWTLRF AK
Arabidopsis Description
COP10FUS9 [Source:UniProtKB/TrEMBL;Acc:A0A178VI85]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.