Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70585 | Canola | plastid | 75.69 | 100.0 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 87.85 | 82.4 |
| HORVU7Hr1G056620.1 | Barley | cytosol | 14.07 | 56.41 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 32.84 | 48.73 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 95.1 | 41.07 |
| AT4G05420.1 | Thale cress | cytosol, nucleus, peroxisome | 92.32 | 39.8 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 88.27 | 38.02 |
| Solyc02g021650.2.1 | Tomato | nucleus | 87.42 | 37.44 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 86.78 | 36.9 |
| CDX76416 | Canola | cytosol | 87.42 | 36.35 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 83.16 | 35.81 |
| KXG22678 | Sorghum | nucleus | 81.88 | 35.26 |
| TraesCS1D01G445700.1 | Wheat | unclear | 81.45 | 35.05 |
| TraesCSU01G002300.1 | Wheat | golgi, plastid | 81.24 | 34.95 |
| Zm00001d039165_P046 | Maize | nucleus | 81.45 | 34.95 |
| TraesCS1B01G473400.1 | Wheat | nucleus | 81.02 | 34.86 |
| HORVU1Hr1G094530.1 | Barley | nucleus, plastid | 80.17 | 32.87 |
| Zm00001d009745_P023 | Maize | cytosol, nucleus, plasma membrane, plastid | 74.84 | 31.94 |
| TraesCS3A01G210100.2 | Wheat | nucleus | 64.82 | 27.97 |
| HORVU3Hr1G050820.11 | Barley | plastid | 64.61 | 26.77 |
| TraesCS3B01G240600.1 | Wheat | cytosol | 55.86 | 25.34 |
| CDY54326 | Canola | cytosol | 6.82 | 13.97 |
| CDY36325 | Canola | nucleus, plastid, vacuole | 20.04 | 7.92 |
| CDY36309 | Canola | cytosol, nucleus, plastid | 19.4 | 7.71 |
| CDX73841 | Canola | nucleus, plastid | 17.91 | 6.26 |
| CDY00750 | Canola | nucleus | 17.48 | 6.12 |
| CDY08477 | Canola | nucleus | 17.06 | 5.88 |
| CDY01074 | Canola | nucleus | 16.63 | 5.74 |
| KRH59212 | Soybean | cytosol, nucleus | 1.71 | 1.5 |
| PGSC0003DMT400009595 | Potato | nucleus | 0.0 | 0.0 |
| KRH43086 | Soybean | nucleus | 0.0 | 0.0 |
| KRH25071 | Soybean | nucleus | 0.0 | 0.0 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 0.0 | 0.0 |
| HORVU7Hr1G056610.1 | Barley | cytosol | 0.0 | 0.0 |
| CDY69266 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:19.2.2.8.3.2 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.2 | UniProt:A0A078JU00 | EnsemblPlants:CDY69930 | ProteinID:CDY69930 |
| ProteinID:CDY69930.1 | ncoils:Coil | InterPro:DDB1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00093647001 | InterPro:IPR015943 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF3 |
| UniParc:UPI0004EF2A8D | InterPro:WD40/YVTN_repeat-like_dom_sf | SEG:seg | : | : | : |
Description
BnaCnng65990DBnaCnng65990D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JU00]
Coordinates
chrLK040705:+:188..3610
Molecular Weight (calculated)
52140.8 Da
IEP (calculated)
4.767
GRAVY (calculated)
0.048
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGETQDFLFI VTERHKFCVL QWDAESSELV
101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRCCF TQLAYCILTS PLLWCLNFRL EELQVLDIKF LFGCAKPTIA
201: VLYQDNKDAR HVKTYEVSLK DKDFVEGPWS QNNLDNGADL LIPVPPPLCG VLIIGEETIV YCSANAFKAI PIRPSITKAY GRVDVDGSRY LLGDHAGLVH
301: LLVITHEKEK VTGLKIELLG ETSIASTISY LDNAVVFVGS SYGDSQLVKL NLHPDAKGSY VEVLERYTNL GPIVDFCVVD LERQGQGQVV TCSGAFKDGS
401: LRIVRNGIGI NEQASVELEG IKGMWSLKSS VDEAFDTFLV VSFISETRIL AMNLEDELEE TEIEGFMSQ
101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRCCF TQLAYCILTS PLLWCLNFRL EELQVLDIKF LFGCAKPTIA
201: VLYQDNKDAR HVKTYEVSLK DKDFVEGPWS QNNLDNGADL LIPVPPPLCG VLIIGEETIV YCSANAFKAI PIRPSITKAY GRVDVDGSRY LLGDHAGLVH
301: LLVITHEKEK VTGLKIELLG ETSIASTISY LDNAVVFVGS SYGDSQLVKL NLHPDAKGSY VEVLERYTNL GPIVDFCVVD LERQGQGQVV TCSGAFKDGS
401: LRIVRNGIGI NEQASVELEG IKGMWSLKSS VDEAFDTFLV VSFISETRIL AMNLEDELEE TEIEGFMSQ
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
Arabidopsis Description
DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.