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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • cytosol 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY70585 Canola plastid 31.71 97.18
Bra029577.1-P Field mustard nucleus, peroxisome, plastid 96.6 96.78
CDY68484 Canola cytosol, endoplasmic reticulum, vacuole 47.52 96.64
CDY69266 Canola nucleus 48.53 96.35
CDY69930 Canola plastid 39.8 92.32
KRH59213 Soybean cytosol, plasma membrane, plastid 42.0 91.4
AT4G21100.1 Thale cress nucleus 91.18 91.18
VIT_10s0003g04360.t01 Wine grape cytosol, nucleus, plasma membrane 90.53 90.45
KRH43086 Soybean nucleus 16.73 89.66
Solyc02g021650.2.1 Tomato nucleus 88.97 88.4
KRH25071 Soybean nucleus 47.89 87.27
GSMUA_Achr8P07200_001 Banana cytosol, nucleus, plasma membrane 85.94 85.86
KRH59212 Soybean cytosol, nucleus 41.82 85.37
KXG22678 Sorghum nucleus 82.63 82.55
Zm00001d039165_P046 Maize nucleus 82.63 82.25
TraesCS1B01G473400.1 Wheat nucleus 81.99 81.83
TraesCSU01G002300.1 Wheat golgi, plastid 81.99 81.83
TraesCS1D01G445700.1 Wheat unclear 81.89 81.74
Zm00001d009745_P023 Maize cytosol, nucleus, plasma membrane, plastid 79.14 78.34
HORVU1Hr1G094530.1 Barley nucleus, plastid 81.89 77.88
TraesCS3A01G210100.2 Wheat nucleus 66.18 66.24
TraesCS3B01G240600.1 Wheat cytosol 62.22 65.47
HORVU3Hr1G050820.11 Barley plastid 66.36 63.78
HORVU7Hr1G056620.1 Barley cytosol 6.8 63.25
HORVU7Hr1G056610.1 Barley cytosol 9.65 52.76
PGSC0003DMT400009595 Potato nucleus 11.03 45.98
AT3G55220.1 Thale cress nucleus, vacuole 22.79 20.43
AT3G55200.1 Thale cress nucleus, vacuole 22.79 20.43
AT3G11960.3 Thale cress nucleus 18.29 14.43
Protein Annotations
MapMan:14.6.1.3.1MapMan:19.2.2.8.3.2Gene3D:2.130.10.10MapMan:26.1.1.3.2Gene3D:3.30.980.30EntrezGene:825890
UniProt:A0A178UYD4ProteinID:AEE82517.1EMBL:AK230366ArrayExpress:AT4G05420EnsemblPlantsGene:AT4G05420RefSeq:AT4G05420
TAIR:AT4G05420RefSeq:AT4G05420-TAIR-GEnsemblPlants:AT4G05420.1TAIR:AT4G05420.1EMBL:AY074257Unigene:At.47587
EMBL:BT001905ProteinID:CAB81084.1InterPro:Cleavage/polyA-sp_fac_asu_Cncoils:CoilInterPro:DDB1Symbol:DDB1A
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003684GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005829
GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006289GO:GO:0006464GO:GO:0006950
GO:GO:0006974GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0009585GO:GO:0009605GO:GO:0009628GO:GO:0009987GO:GO:0010017GO:GO:0016567
GO:GO:0019538GO:GO:0043161GO:GO:0080008InterPro:IPR015943RefSeq:NP_192451.1ProteinID:OAO98427.1
PFAM:PF03178PFAM:PF10433PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007131PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR10644PANTHER:PTHR10644:SF3
UniProt:Q9M0V3SUPFAM:SSF50978UniParc:UPI000000BD36InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeat_dom_sfSEG:seg
Description
DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
Coordinates
chr4:+:2746114..2753014
Molecular Weight (calculated)
121313.0 Da
IEP (calculated)
4.939
GRAVY (calculated)
-0.103
Length
1088 amino acids
Sequence
(BLAST)
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.