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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plasma membrane
 nucleus: 18363785
plastid: 18363785
extracellular: 22364583
nucleus: 28394025
extracellular: 29876421
gfp PMID: 18363785 doi
S Wang, J Liu, Y Feng, X Niu, J Giovannoni, Y Liu
Ministry of Education Key Laboratory for Bio-resource and Eco-environment, College of Life Science and State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China.
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g005840.2.1
Solyc01g056340.2.1
Solyc01g067600.2.1
Solyc01g104510.2.1
Solyc01g109560.2.1
Solyc01g111590.2.1
Solyc02g021470.2.1
Solyc02g070460.2.1
Solyc02g078830.2.1
Solyc06g008880.2.1
Solyc07g040780.2.1
Solyc07g040790.2.1
Solyc07g041080.2.1
Solyc07g053660.2.1
Solyc08g067140.1.1
Solyc08g067490.1.1
Solyc08g067570.1.1
Solyc08g067590.1.1
Solyc08g074370.2.1
Solyc09g010620.1.1
Solyc09g031610.2.1
Solyc10g047000.1.1
Solyc12g009030.1.1
Solyc12g017610.1.1
Solyc12g088340.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G05420.1 Solyc12g088340.1.1 AT1G19750.1 20622147
AT4G05420.1 Solyc02g078830.2.1 AT1G65030.1 18223036
AT4G05420.1 Solyc10g047000.1.1 AT1G80670.1 18223036
AT4G05420.1 Solyc07g040780.2.1 AT2G19430.1 18223036
AT4G05420.1 Solyc07g040790.2.1 AT2G19430.1 18223036
AT4G05420.1 Solyc01g005840.2.1 AT3G13550.1 16844902
AT4G05420.1 Solyc06g008880.2.1 AT4G03020.1 21798944
AT4G05420.1 Solyc01g056340.2.1 AT4G10180.1 16792691
AT4G05420.1 Solyc01g067600.2.1 AT4G15730.1 21798944
AT4G05420.1 Solyc08g067140.1.1 AT4G15730.1 21798944
AT4G05420.1 Solyc08g067490.1.1 AT4G15730.1 21798944
AT4G05420.1 Solyc08g067570.1.1 AT4G15730.1 21798944
AT4G05420.1 Solyc08g067590.1.1 AT4G15730.1 21798944
AT4G05420.1 Solyc12g017610.1.1 AT4G15730.1 21798944
AT4G05420.1 Solyc09g010620.1.1 AT4G15900.1 18223036
AT4G05420.1 Solyc07g053660.2.1 AT4G28450.1 18223036
AT4G05420.1 Solyc07g041080.2.1 AT4G29830.1 18223036
AT4G05420.1 Solyc12g009030.1.1 AT4G29830.1 18223036
AT4G05420.1 Solyc08g074370.2.1 AT4G31160.1 18552200
AT4G05420.1 Solyc01g109560.2.1 AT4G34460.1 18223036
AT4G05420.1 Solyc01g111590.2.1 AT4G35050.1 18223036
AT4G05420.1 Solyc02g021470.2.1 AT5G46210.1 16792691
AT4G05420.1 Solyc02g070460.2.1 AT5G46210.1 16792691
AT4G05420.1 Solyc02g021470.2.1 AT5G46210.1 16844902
AT4G05420.1 Solyc02g070460.2.1 AT5G46210.1 16844902
AT4G05420.1 Solyc02g021470.2.1 AT5G46210.1 18223036
AT4G05420.1 Solyc02g070460.2.1 AT5G46210.1 18223036
AT4G05420.1 Solyc02g021470.2.1 AT5G46210.1 18551167
AT4G05420.1 Solyc02g070460.2.1 AT5G46210.1 18551167
AT4G05420.1 Solyc01g104510.2.1 AT5G58230.1 21240189
AT4G05420.1 Solyc09g031610.2.1 AT5G58760.1 16792691
AT4G05420.1 Solyc09g031610.2.1 AT5G58760.1 18551167
AT4G05420.1 Solyc09g031610.2.1 AT5G58760.1 21240189
AT4G21100.1 Solyc02g021470.2.1 AT5G46210.1 16792691
AT4G21100.1 Solyc02g070460.2.1 AT5G46210.1 16792691
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_10s0003g04360.t01 Wine grape cytosol, nucleus, plasma membrane 92.42 92.93
CDY70585 Canola plastid 29.95 92.39
KRH59213 Soybean cytosol, plasma membrane, plastid 42.01 92.0
KRH43086 Soybean nucleus 16.8 90.64
AT4G05420.1 Thale cress cytosol, nucleus, peroxisome 88.4 88.97
Bra029577.1-P Field mustard nucleus, peroxisome, plastid 87.85 88.58
CDY68484 Canola cytosol, endoplasmic reticulum, vacuole 43.01 88.04
KRH25071 Soybean nucleus 47.67 87.44
CDY69930 Canola plastid 37.44 87.42
CDY69266 Canola nucleus 43.74 87.41
GSMUA_Achr8P07200_001 Banana cytosol, nucleus, plasma membrane 86.67 87.14
AT4G21100.1 Thale cress nucleus 85.39 85.94
KRH59212 Soybean cytosol, nucleus 41.74 85.74
CDY57060 Canola cytosol, nucleus, plasma membrane 84.29 83.68
KXG22678 Sorghum nucleus 81.83 82.28
Zm00001d039165_P046 Maize nucleus 81.92 82.07
TraesCSU01G002300.1 Wheat golgi, plastid 81.46 81.83
TraesCS1B01G473400.1 Wheat nucleus 81.46 81.83
TraesCS1D01G445700.1 Wheat unclear 81.28 81.65
CDX76416 Canola cytosol 83.93 81.47
Zm00001d009745_P023 Maize cytosol, nucleus, plasma membrane, plastid 78.36 78.07
HORVU1Hr1G094530.1 Barley nucleus, plastid 81.28 77.8
Bra020884.1-P Field mustard cytosol 83.84 71.61
TraesCS3A01G210100.2 Wheat nucleus 66.12 66.61
TraesCS3B01G240600.1 Wheat cytosol 62.74 66.44
HORVU7Hr1G056620.1 Barley cytosol 6.94 64.96
HORVU3Hr1G050820.11 Barley plastid 66.21 64.05
HORVU7Hr1G056610.1 Barley cytosol 9.59 52.76
CDY50606 Canola golgi, mitochondrion, plasma membrane 14.43 50.0
PGSC0003DMT400009595 Potato nucleus 11.69 49.04
CDY54326 Canola cytosol 8.77 41.92
Solyc04g010260.2.1 Tomato nucleus 22.37 20.85
Solyc10g080630.1.1 Tomato nucleus 18.08 14.21
Protein Annotations
MapMan:14.6.1.3.1MapMan:19.2.2.8.3.2Gene3D:2.130.10.10MapMan:26.1.1.3.2Gene3D:3.30.980.30InterPro:Cleavage/polyA-sp_fac_asu_C
ncoils:CoilInterPro:DDB1GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003684
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006289GO:GO:0006464GO:GO:0006950
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009585
GO:GO:0009605GO:GO:0009628GO:GO:0009987GO:GO:0010017GO:GO:0016567GO:GO:0019538
GO:GO:0031461GO:GO:0043161InterPro:IPR015943UniProt:K4B513PFAM:PF03178PFAM:PF10433
PANTHER:PTHR10644PANTHER:PTHR10644:SF3InterPro:Quinoprotein_ADH-like_supfamSUPFAM:SSF50998EnsemblPlantsGene:Solyc02g021650.2EnsemblPlants:Solyc02g021650.2.1
UniParc:UPI00003BE9B0InterPro:WD40/YVTN_repeat-like_dom_sfSEG:seg:::
Description
No Description!
Coordinates
chr2:-:23362148..23382543
Molecular Weight (calculated)
122300.0 Da
IEP (calculated)
4.901
GRAVY (calculated)
-0.100
Length
1095 amino acids
Sequence
(BLAST)
0001: MSVWNYVVTA HKPTNVTHSC VGNFTGPQEL NLIIAKCTRI EIHLLTPQGL QCICLQPMLD VPIYGRIATL ELFRPHGETQ DLLFIATERY KFCVLQWDTE
0101: ASEVITRAMG DVSDRIGRPT DNGQIGIIDP DCRLIGLHLY DGLFKVIPFD NKGQLKEAFN IRLEELQVLD IKFLYGCPKP TIVVLYQDNK DARHVKTYEV
0201: SLKDKDFIEG PWAQNNLDNG ASLLIPVPPP LCGVLIIGEE TIVYCSASAF KAIPIRPSIT RAYGRVDADG SRYLLGDHNG LLHLLVITHE KEKVTGLKIE
0301: LLGETSIAST ISYLDNAFVF IGSSYGDSQL VKLNLQPDTK GSYVEVLERY VNLGPIVDFC VVDLERQGQG QVVTCSGAYK DGSLRIVRNG IGINEQASVE
0401: LQGIKGMWSL RSATDDPYDT FLVVSFISET RVLAMNLEDE LEETEIEGFN SQVQTLFCHD AVYNQLVQVT SNSVRLVSST SRDLKNEWFA PVGYSVNVAT
0501: ANATQVLLAT GGGHLVYLEI GDGVLNEVKY AKLDYDISCL DINPIGENPN YSNIAAVGMW TDISVRIYSL PDLNLITKEQ LGGEIIPRSV LMCSFEGISY
0601: LLCALGDGHL LNFVLSMSTG ELTDRKKVSL GTQPITLRTF SSKDTTHVFA ASDRPTVIYS SNKKLLYSNV NLKEVSHMCP FNVAAFPDSL AIAKEGELTI
0701: GTIDEIQKLH IRSIPLGEHA RRISHQEQTR TFALCSVKYT QSNADDPEMH FVRLLDDQTF EFISTYPLDQ FEYGCSILSC SFSDDSNVYY CIGTAYVMPE
0801: ENEPTKGRIL VFIVEDGKLQ LIAEKETKGA VYSLNAFNGK LLAAINQKIQ LYKWASREDG GSRELQTECG HHGHILALYV QTRGDFIVVG DLMKSISLLI
0901: FKHEEGAIEE RARDYNANWM SAVEILDDDI YLGAENNFNL FTVRKNSEGA TDEERSRLEV VGEYHLGEFV NRFRHGSLVM RLPDSDVGQI PTVIFGTVNG
1001: VIGVIASLPH DQYLFLEKLQ TNLRKVIKGV GGLSHEQWRS FYNEKKTVDA KNFLDGDLIE SFLDLSRNRM EEISKAMSVP VEELMKRVEE LTRLH
Best Arabidopsis Sequence Match ( AT4G05420.1 )
(BLAST)
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
Arabidopsis Description
DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.