Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22678 | Sorghum | nucleus | 93.81 | 94.67 |
| Zm00001d039165_P046 | Maize | nucleus | 93.81 | 94.33 |
| TraesCS1B01G473400.1 | Wheat | nucleus | 88.26 | 88.99 |
| TraesCSU01G002300.1 | Wheat | golgi, plastid | 88.17 | 88.9 |
| TraesCS1D01G445700.1 | Wheat | unclear | 88.17 | 88.9 |
| HORVU1Hr1G094530.1 | Barley | nucleus, plastid | 89.08 | 85.58 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 80.07 | 80.81 |
| KRH25071 | Soybean | nucleus | 43.86 | 80.74 |
| KRH43086 | Soybean | nucleus | 14.74 | 79.8 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 78.62 | 79.34 |
| AT4G05420.1 | Thale cress | cytosol, nucleus, peroxisome | 78.34 | 79.14 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 38.49 | 79.07 |
| CDY69266 | Canola | nucleus | 39.13 | 78.47 |
| Solyc02g021650.2.1 | Tomato | nucleus | 78.07 | 78.36 |
| KRH59212 | Soybean | cytosol, nucleus | 37.94 | 78.24 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 77.16 | 78.08 |
| CDY70585 | Canola | plastid | 25.02 | 77.46 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 35.12 | 77.2 |
| AT4G21100.1 | Thale cress | nucleus | 75.89 | 76.65 |
| CDY69930 | Canola | plastid | 31.94 | 74.84 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 74.34 | 74.07 |
| CDX76416 | Canola | cytosol | 73.79 | 71.9 |
| Bra020884.1-P | Field mustard | cytosol | 73.7 | 63.18 |
| PGSC0003DMT400009595 | Potato | nucleus | 10.92 | 45.98 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 12.74 | 44.3 |
| CDY54326 | Canola | cytosol | 7.46 | 35.81 |
| Zm00001d015208_P003 | Maize | extracellular, plasma membrane | 21.11 | 18.88 |
| Zm00001d019115_P048 | Maize | plastid | 18.93 | 15.34 |
Protein Annotations
| MapMan:14.6.1.3.1 | MapMan:19.2.2.8.3.2 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.2 | Gene3D:3.30.980.30 | UniProt:A0A1D6FLI0 |
| ProteinID:AQK92543.1 | InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil | InterPro:DDB1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:IPR015943 | PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF3 |
| InterPro:Quinoprotein_ADH-like_supfam | SUPFAM:SSF50978 | SUPFAM:SSF50998 | UniParc:UPI0008441331 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat_dom_sf |
| EnsemblPlantsGene:Zm00001d009745 | EnsemblPlants:Zm00001d009745_P023 | EnsemblPlants:Zm00001d009745_T023 | SEG:seg | : | : |
Description
DNA damage-binding protein 1a
Coordinates
chr8:+:79160123..79181339
Molecular Weight (calculated)
123133.0 Da
IEP (calculated)
5.216
GRAVY (calculated)
-0.093
Length
1099 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATQLETFVL NLLPRNTCNN RVRIFFCWQL PVQSFTKAHL HQPFRKCTRI EIHLLTPQGL QPMLDVPIYG RIATIELFRP HNETQDFLFI ATERYKFCVL
0101: QWDTEKSELI TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLH GCVKPTIVVL YQDNKDVRHV
0201: KTYEVALKDK DFIEGPWSQN NVDNGAGLLI PVPAPLGGVI IIGEEQIVYC NANSTFKAIP IKQSIIRAYG RVDPDGSRYL LGDNTGILHL LVLTHERERV
0301: TGLKIEYLGE TSIASSISYL DNGVVYVGSR FGDSQLVKLN LQADASGSFV EILERYVNLG PIVDFCVIDL DRQGQGQVVT CSGAFKDGSL RVVRNGIGIN
0401: EQASVELQGI KGLWSLKSSF NDPYDMYLVV SFISETRFLA MNMEDELEET EIEGFDAQTQ TLFCQNAIND LLIQVTANSV RLVSCTSREL VDQWNAPAGF
0501: SVNVASANAS QVLLATGGGH LVYLEIRDAK LVEVKHAQLE HEISCLDLNP IGEHLEYSSL AAVGMWTDIS VRIFSLPDLV LIRKENLGGE IVPRSVLLCT
0601: LEGVSYLLCA LGDGNLFSFL LNASTGELTD RKKVTLGTQP ISLRTFSSKG TTHVFASSDR PTVIYSSNKK LLYSNVNLKE VNHMCPFNTA AFPDSLAIAK
0701: EGELSIGTID DIQKLHIRTI PLNEQARRIC HQEQSKTLAF CSFKYNQSVE ESETHLIRLL DHQTFESLCV YPLDQYECGC SIISCSFVDD NNVYYCVGTA
0801: YVIPEENEPT KGRILVFAVE DGSLQLIVEK ETKGAVYSLN AFNGKLLAAI NQKIQLYKWM SREDGSHELQ SECGHHGHIL ALYTQTRGDF IVVGDLMKSI
0901: SLLVYKHEES AIEERARDYN ANWMTAVEML DDEVYVGAEN GYNLFTVRKN SDAATDDERA KLEVVGEYHL GEFVNRFRHG SLVMRLPDSE IGKIPTVIFG
1001: TINGVIGIIA SLPHDHYTFL EKFQSTLVKY IKGVGNMSHE QWRSFHNDKK TAEARNFLDG DLIESFLDLS RSKMEVVSKA MGVSVEDLSK IVEELTRLH
0101: QWDTEKSELI TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLH GCVKPTIVVL YQDNKDVRHV
0201: KTYEVALKDK DFIEGPWSQN NVDNGAGLLI PVPAPLGGVI IIGEEQIVYC NANSTFKAIP IKQSIIRAYG RVDPDGSRYL LGDNTGILHL LVLTHERERV
0301: TGLKIEYLGE TSIASSISYL DNGVVYVGSR FGDSQLVKLN LQADASGSFV EILERYVNLG PIVDFCVIDL DRQGQGQVVT CSGAFKDGSL RVVRNGIGIN
0401: EQASVELQGI KGLWSLKSSF NDPYDMYLVV SFISETRFLA MNMEDELEET EIEGFDAQTQ TLFCQNAIND LLIQVTANSV RLVSCTSREL VDQWNAPAGF
0501: SVNVASANAS QVLLATGGGH LVYLEIRDAK LVEVKHAQLE HEISCLDLNP IGEHLEYSSL AAVGMWTDIS VRIFSLPDLV LIRKENLGGE IVPRSVLLCT
0601: LEGVSYLLCA LGDGNLFSFL LNASTGELTD RKKVTLGTQP ISLRTFSSKG TTHVFASSDR PTVIYSSNKK LLYSNVNLKE VNHMCPFNTA AFPDSLAIAK
0701: EGELSIGTID DIQKLHIRTI PLNEQARRIC HQEQSKTLAF CSFKYNQSVE ESETHLIRLL DHQTFESLCV YPLDQYECGC SIISCSFVDD NNVYYCVGTA
0801: YVIPEENEPT KGRILVFAVE DGSLQLIVEK ETKGAVYSLN AFNGKLLAAI NQKIQLYKWM SREDGSHELQ SECGHHGHIL ALYTQTRGDF IVVGDLMKSI
0901: SLLVYKHEES AIEERARDYN ANWMTAVEML DDEVYVGAEN GYNLFTVRKN SDAATDDERA KLEVVGEYHL GEFVNRFRHG SLVMRLPDSE IGKIPTVIFG
1001: TINGVIGIIA SLPHDHYTFL EKFQSTLVKY IKGVGNMSHE QWRSFHNDKK TAEARNFLDG DLIESFLDLS RSKMEVVSKA MGVSVEDLSK IVEELTRLH
0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII
Arabidopsis Description
SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]
SUBAcon: [vacuole,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.