CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plasma membrane
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G056620.1	Barley	cytosol	19.3	52.14
CDY69930	Canola	plastid	48.73	32.84
KRH59213	Soybean	cytosol, plasma membrane, plastid	50.63	32.0
CDY70585	Canola	plastid	27.85	24.79
CDY54326	Canola	cytosol	16.46	22.71
VIT_10s0003g04360.t01	Wine grape	cytosol, nucleus, plasma membrane	51.58	14.97
CDY57060	Canola	cytosol, nucleus, plasma membrane	51.9	14.87
CDX76416	Canola	cytosol	52.53	14.72
Solyc02g021650.2.1	Tomato	nucleus	50.0	14.43
GSMUA_Achr8P07200_001	Banana	cytosol, nucleus, plasma membrane	47.78	13.87
KXG22678	Sorghum	nucleus	46.52	13.5
Zm00001d039165_P046	Maize	nucleus	45.57	13.17
TraesCSU01G002300.1	Wheat	golgi, plastid	45.25	13.12
TraesCS1D01G445700.1	Wheat	unclear	45.25	13.12
TraesCS1B01G473400.1	Wheat	nucleus	45.25	13.12
Zm00001d009745_P023	Maize	cytosol, nucleus, plasma membrane, plastid	44.3	12.74
HORVU1Hr1G094530.1	Barley	nucleus, plastid	44.3	12.24
TraesCS3A01G210100.2	Wheat	nucleus	41.77	12.14
TraesCS3B01G240600.1	Wheat	cytosol	39.24	11.99
HORVU3Hr1G050820.11	Barley	plastid	42.41	11.84
CDY36309	Canola	cytosol, nucleus, plastid	19.3	5.17
CDY36325	Canola	nucleus, plastid, vacuole	19.3	5.14
CDX73841	Canola	nucleus, plastid	19.3	4.55
CDY08477	Canola	nucleus	18.99	4.41
CDY00750	Canola	nucleus	18.67	4.41
CDY01074	Canola	nucleus	18.67	4.34
KRH59212	Soybean	cytosol, nucleus	3.16	1.88
KRH43086	Soybean	nucleus	0.32	0.49
PGSC0003DMT400009595	Potato	nucleus	0.32	0.38
CDY69266	Canola	nucleus	0.63	0.36
KRH25071	Soybean	nucleus	0.63	0.34
CDY68484	Canola	cytosol, endoplasmic reticulum, vacuole	0.32	0.19
HORVU7Hr1G056610.1	Barley	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078IKS9	EnsemblPlants:CDY50606	ProteinID:CDY50606	ProteinID:CDY50606.1
InterPro:DDB1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00097131001
InterPro:IPR015943	PFAM:PF10433	PANTHER:PTHR10644	PANTHER:PTHR10644:SF3	SignalP:SignalP-noTM	UniParc:UPI0004EE726D
InterPro:WD40/YVTN_repeat-like_dom_sf	:	:	:	:	:

Description

BnaC03g43970DBnaC03g43970D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078IKS9]

Coordinates

chrLK032926:+:2822..4462

Molecular Weight (calculated)

34833.8 Da

IEP (calculated)

5.567

GRAVY (calculated)

0.092

Length

316 amino acids

Sequence
(BLAST)

001: WLNGAYVLFH LTTLGSLRNL LSQGRCVTCW SRTSNFFMAV LCQDAEGAHA KTYYVSQTGS VPVTGPWTRD NIDQSAGLLI ALPTPLCGVL IVGEELIVYC
101: SANTYKERPK PCQNHLEDWM GRLHLVAVSH ENQRVTDLRV ELLGETSIAS TISYLGNSLV FVGSSCSDSQ LIKIDLDAQG SRIQVLKKFV NLGPIHDLCL
201: VDPEKHGQSQ VVTCSGGSKY GSLRIVSKGI NEKASLELEG IAGLWSLKSS VDEALDTFFV VSFIGETRIF AMNRVDELEE TEIKGFLSEV RTLFCHDAVH
301: NQIVQTFSDL LILNYV

Best Arabidopsis Sequence Match ( AT4G05420.1 )
(BLAST)

0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH

Arabidopsis Description

DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.