CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36325	Canola	nucleus, plastid, vacuole	97.54	97.05
Bra034172.1-P	Field mustard	nucleus, plastid, vacuole	98.9	96.21
AT3G55220.1	Thale cress	nucleus, vacuole	95.6	93.0
AT3G55200.1	Thale cress	nucleus, vacuole	95.6	93.0
VIT_00s0317g00100.t01	Wine grape	endoplasmic reticulum	88.4	86.0
KRH36214	Soybean	nucleus	88.23	85.83
KRG92964	Soybean	nucleus	87.21	84.84
GSMUA_Achr9P30340_001	Banana	cytosol	49.79	84.0
PGSC0003DMT400077607	Potato	nucleus	85.77	83.65
Solyc04g010260.2.1	Tomato	nucleus	82.64	83.06
Os02t0137400-01	Rice	nucleus	58.0	79.84
GSMUA_Achr6P19780_001	Banana	cytosol	64.94	78.51
TraesCS6B01G135400.1	Wheat	unclear	80.44	77.42
TraesCS6D01G095000.1	Wheat	mitochondrion	80.36	77.34
TraesCS6A01G107200.1	Wheat	nucleus	80.27	77.26
EES04483	Sorghum	mitochondrion	80.53	77.19
HORVU6Hr1G019130.1	Barley	mitochondrion	79.93	76.94
Zm00001d015208_P003	Maize	extracellular, plasma membrane	79.76	76.65
VIT_15s0107g00230.t01	Wine grape	nucleus	8.3	75.38
VIT_15s0107g00220.t01	Wine grape	cytosol	8.21	66.9
CDY69266	Canola	nucleus	10.5	22.63
CDY68484	Canola	cytosol, endoplasmic reticulum, vacuole	10.16	22.43
CDY57060	Canola	cytosol, nucleus, plasma membrane	20.49	21.94
CDX76416	Canola	cytosol	20.41	21.37
CDY54326	Canola	cytosol	3.9	20.09
CDY69930	Canola	plastid	7.71	19.4
CDY50606	Canola	golgi, mitochondrion, plasma membrane	5.17	19.3
CDX73841	Canola	nucleus, plastid	19.73	17.38
CDY00750	Canola	nucleus	19.64	17.33
CDY70585	Canola	plastid	5.17	17.18
CDY08477	Canola	nucleus	18.8	16.32
CDY01074	Canola	nucleus	18.71	16.26

Protein Annotations

MapMan:16.4.1.2.4.3	Gene3D:2.130.10.10	GO:A0A078HFW6	UniProt:A0A078HFW6	EnsemblPlants:CDY36309	ProteinID:CDY36309
ProteinID:CDY36309.1	InterPro:Cleavage/polyA-sp_fac_asu_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00060284001	InterPro:IPR015943
PFAM:PF03178	PFAM:PF10433	PANTHER:PTHR10644	PANTHER:PTHR10644:SF1	SUPFAM:SSF50978	UniParc:UPI0004EE8AB7
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaA01g31090DBnaA01g31090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFW6]

Coordinates

chrLK032372:+:269207..273327

Molecular Weight (calculated)

131152.0 Da

IEP (calculated)

5.104

GRAVY (calculated)

-0.208

Length

1181 amino acids

Sequence
(BLAST)

0001: MYLYSLTLQQ ATGITCAING NFSGGKAQEI AVARGKILDL LRPDENGSDS GRIVILEYNK EKNVFDKVHQ ETFGKSGCRR IVPGQYLAVD PKGRAVMVGA
0101: CEKQKLVYVL NRDTAARLTI SSPLEAHKSH TICYSVCGVD CGFDNPVFAA VELDYSEADQ DPTGQASSEA QKHLTFYELD LGLNHVSRKW SEPVDNGANM
0201: LVTVPGGADG PSGVLVCAEN FVIYKNQGHP DVRAVIPRRA DLPAERGVLV VSAAMHKQKT TFFFLLQTEY GDVFKATLDH DGDHVSELKI KYFDTIPVAA
0301: SICVLKLGFL FAASEFGNHG LYQFQAIGDE PDVESSSSNL METEDGFQPV FFQPRRLKNL VRIDQVESLM PLMDMKVLNL FEEETPQIFS LCGRGPRSSL
0401: RILRPGLAIS EMAVSQLPGQ PSAVWTVKKN VSDEFDAYIV VSFTNATLVL SIGETVEEVN DSGFLDTTPS LAVSLIGDDS LMQVHPNGIR HIREDGRINE
0501: WRTPGKRSIV KVGYNRLQVV IALSGGELIY FEADMTGQLM EVEKHEMSGD VACLDIAPVP EGRQRSRFLA VGSYDNTVRI LSLDPDDCLQ ILSVQSVSSA
0601: PESLLFLEVQ ASIGGDDGAD HPASLFLNSG LQNGVLFRTV VDMVTGQLSD SRSRFLGLKP PKLFAISVRG RSAMLCLSSR PWLGYIHRGH FHLTPLSYET
0701: LEFAAPFSSD QCAEGVVSVA GDALRIFMFD RLGETFNETM VPLRYTPRKF VVHPKKKLLV IVESDQGAFT AEEREAARKE CFQAGGAGEN GNGSADQMEN
0801: GGDDEDKEDP LCDEQYGYPK AESEKWVSCI RVVDPKTADT TCLLELQDNE AAYSVCTVNF HDKEYGTLLA VGTVKGMQFW PKKRLVAGFI HIYRFVEEGR
0901: KLELLHKTQV EGVPLALCQF QGRLLAGIGP VLRLYDLGKK RLLRKCENKL FPNTIISIQT YRDRIYVGDI QESFHYCKYR RDENQLYIFA DDCVPRWLTA
1001: SHHVDFDTMA GADKFGNIYF VRLPQDVSEE IEEDPTGGKI KWEQGKLNGA PNKVDEIVQF HVGDVVTCLQ KASMIPGGSE SIMYGTVMGS IGALHAFTSR
1101: DDVDFFSHLE MHMRQEYPPL CGRDHMAYRS AYFPVKDVID GDLCEQFPTL PIDLQRKIAD ELDRTPAEIL KKLEDARNKI I

Best Arabidopsis Sequence Match ( AT3G55200.2 )
(BLAST)

0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII

Arabidopsis Description

SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.