Factsheet for VIT_15s0107g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P30340_001	Banana	cytosol	60.0	11.14
Os02t0137400-01	Rice	nucleus	70.0	10.61
VIT_00s0317g00100.t01	Wine grape	endoplasmic reticulum	80.77	8.65
KRH36214	Soybean	nucleus	78.46	8.4
KRG92964	Soybean	nucleus	78.46	8.4
CDY36309	Canola	cytosol, nucleus, plastid	75.38	8.3
CDY36325	Canola	nucleus, plastid, vacuole	75.38	8.26
AT3G55220.1	Thale cress	nucleus, vacuole	76.15	8.15
AT3G55200.1	Thale cress	nucleus, vacuole	76.15	8.15
Solyc04g010260.2.1	Tomato	nucleus	72.31	8.0
Bra034172.1-P	Field mustard	nucleus, plastid, vacuole	73.85	7.91
GSMUA_Achr6P19780_001	Banana	cytosol	59.23	7.88
PGSC0003DMT400077607	Potato	nucleus	71.54	7.68
HORVU6Hr1G019130.1	Barley	mitochondrion	70.0	7.42
TraesCS6B01G135400.1	Wheat	unclear	70.0	7.42
TraesCS6D01G095000.1	Wheat	mitochondrion	70.0	7.42
TraesCS6A01G107200.1	Wheat	nucleus	69.23	7.33
EES04483	Sorghum	mitochondrion	67.69	7.14
Zm00001d015208_P003	Maize	extracellular, plasma membrane	63.85	6.75
VIT_10s0003g04360.t01	Wine grape	cytosol, nucleus, plasma membrane	20.77	2.48
VIT_15s0024g01220.t01	Wine grape	cytosol	1.54	1.83
VIT_08s0007g07150.t01	Wine grape	cytosol, nucleus, plasma membrane	15.38	1.47
VIT_15s0107g00220.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	ProteinID:CCB60879	ProteinID:CCB60879.1	InterPro:Cleavage/polyA-sp_fac_asu_C	UniProt:F6I1R2
EMBL:FN596514	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0031461	GO:GO:0043161	InterPro:IPR015943	PFAM:PF03178
PANTHER:PTHR10644	PANTHER:PTHR10644:SF1	UniParc:UPI000210A7FE	ArrayExpress:VIT_15s0107g00230	EnsemblPlantsGene:VIT_15s0107g00230	EnsemblPlants:VIT_15s0107g00230.t01
InterPro:WD40/YVTN_repeat-like_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr15:+:8378173..8378565

Molecular Weight (calculated)

14764.4 Da

IEP (calculated)

4.746

GRAVY (calculated)

-0.502

Length

130 amino acids

Sequence
(BLAST)

001: MENGGEDEDK DDPLSDEQYG YPKAESDKWV SCIRILDPRT ACTTCLLELQ DNEAAFSICT VNFHDKEYGT LLAVDTPKSP QFWPKRSFDA GYIHNYVPLA
101: LCQLQGRFLA RIRSMLRLYD LGKGRLPGNV

Best Arabidopsis Sequence Match ( AT3G55200.2 )
(BLAST)

0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII

Arabidopsis Description

SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.