Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g080630.1.1 | Tomato | nucleus | 66.84 | 65.4 |
| KRH68075 | Soybean | nucleus, plastid | 66.25 | 65.1 |
| KRG96340 | Soybean | nucleus, plastid | 66.03 | 64.89 |
| CDY08477 | Canola | nucleus | 63.24 | 63.38 |
| Bra001431.1-P | Field mustard | nucleus, plastid | 62.29 | 63.31 |
| CDX73841 | Canola | nucleus, plastid | 62.29 | 63.31 |
| VIT_15s0024g01220.t01 | Wine grape | cytosol | 5.06 | 63.3 |
| AT3G11960.3 | Thale cress | nucleus | 63.98 | 63.23 |
| CDY01074 | Canola | nucleus | 62.29 | 62.47 |
| CDY00750 | Canola | nucleus | 60.75 | 61.84 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 59.87 | 60.44 |
| Bra034797.1-P | Field mustard | nucleus | 62.22 | 58.4 |
| Os07t0203700-01 | Rice | cytosol, nucleus | 27.0 | 55.26 |
| KXG34639 | Sorghum | plastid | 50.26 | 50.33 |
| TraesCS2B01G258400.1 | Wheat | cytosol, nucleus | 44.61 | 50.29 |
| Zm00001d019115_P048 | Maize | plastid | 49.82 | 50.07 |
| HORVU2Hr1G055870.14 | Barley | plastid | 49.08 | 49.19 |
| TraesCS2A01G243300.3 | Wheat | plastid | 48.94 | 49.01 |
| TraesCS2D01G245600.6 | Wheat | plastid | 48.94 | 49.01 |
| Os07t0203800-01 | Rice | cytosol, plastid | 7.19 | 34.88 |
| VIT_15s0107g00220.t01 | Wine grape | cytosol | 2.35 | 22.07 |
| VIT_00s0317g00100.t01 | Wine grape | endoplasmic reticulum | 17.09 | 19.19 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 15.04 | 18.82 |
| VIT_15s0107g00230.t01 | Wine grape | nucleus | 1.47 | 15.38 |
Protein Annotations
| EntrezGene:100252096 | wikigene:100252096 | Gene3D:2.130.10.10 | Gene3D:3.30.980.30 | MapMan:35.1 | ProteinID:CBI29964 |
| ProteinID:CBI29964.3 | InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil | UniProt:D7TI88 | EMBL:FN595991 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:IPR015943 | EntrezGene:LOC100252096 | wikigene:LOC100252096 | PFAM:PF03178 | PFAM:PF10433 |
| PANTHER:PTHR10644 | PANTHER:PTHR10644:SF6 | UniParc:UPI0001BE356B | ArrayExpress:VIT_08s0007g07150 | EnsemblPlantsGene:VIT_08s0007g07150 | EnsemblPlants:VIT_08s0007g07150.t01 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | RefSeq:XP_002276675 | RefSeq:XP_002276675.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr8:-:20792512..20812812
Molecular Weight (calculated)
149358.0 Da
IEP (calculated)
5.358
GRAVY (calculated)
0.118
Length
1363 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAVAEEECSS TKSRSASNND SHYLAKCVLK GSVVLHVVHG RIRSPSFSDI VFGKETSLEL VIIGEDGIVQ SVCEQAVFGT IKDLAVLRWN ERFHHQNLQM
0101: QGRDLLVVVS DSGKLSFLRF CNEMHRFFPV THVQLSSPGN LRNQLGQMLA IDSNGCFIAT SAYEDRLAMF SISMATDSDI IDKRIFYPPE IEGDSGVARS
0201: VHRTSISGTI WSMCFISKDL NQPSGGYNPV LAIILNRRGA VLTELVLLEW IIIENAVRVI SQYAEAGHVA HSIVEVPHSY GFAFLFRIGD ALLMDLRDAH
0301: NPCCVYKTSL NILPTSVEQN FAEESCRVHD GDEDGIFNVA ASALLELKDY VAKGDDPMNV DGDSGMVKST SKHVCALSWE PGNEKNSRMI FCVDTGELFM
0401: IEISFDSDGP KVNLSDCLYR GLSCKALLWF AGGFLAALVE MGDGMVLKLE QGRLVYRSPI QNIAPILDMS VVDCHDEEHD QMFACCGVTP EGSLRIIRSG
0501: ISVEKLLRTA PIYQGITGTW TVKMKVIDSY HSFLVLSFVE ETRVLSVGLS FTDVTDSVGF QPDVSTLACG VVDDGLLVQI HKNGVKLCLP TTVAHPEGIP
0601: LASPICTSWF PENISISLGA VGYNLIVVAT SSPCFLFILG VRSVSAYQYE IYEMQHVRLQ NEVSCISIPH KHFDKKPSTF LSNLVDNSSA AALLIGVNIG
0701: RIFVIGTHKP SVEILSFLPD EGLRILASGA ISLTNTLGTA VSGCVPQDAR LVLVDRFYVL SGLRNGMLLR FELPAASMVF SSELSSHSPS TNINSPVNLQ
0801: LIAIRRIGIT PVFLVPLSDS LEADIIALSD RPWLLQSARH SLSYTSISFQ PSTHVTPVCS MECPMGILFV AENSLHLVEM VHSKRLNVQK FYLGGTPRKV
0901: LYHSESRLLL VMRTELSQDT YSSDICCVDP LSGSVLSSFK LELGETGKSM ELVRVVNEQV LVIGTSLSSG PAMMPSGEAE STKGRLIVLC LEHMQNSDSG
1001: SMTFCSKAGS SSQRTSPFRE IVGYAAEQLS GSSLCSSPDD TSCDGVRLEE SEAWQLRLAY TATWPGMVLA ICPYLDRYFL ASAGNSFYVC GFPNDNPQRV
1101: RRFAVGRTRF MIMSLTAHFT RIAVGDCRDG VVFYSYHEDS RKLEQLYCDP EQRLVADCIL MDVDTAVVSD RKGSIAVLSC SNHLEDNASP ECNLTLNCSY
1201: YMGEIAMSIK KGSFSYKLPA DDVLKGCDGS NTIIDFSENS IMAGTLLGSI IMLIPISREE HELLEAVQAR LAVHQLTAPI LGNDHNEFRS RENSVRKAGV
1301: SKILDGDMLA QFLELTSMQQ EAVLALPLGS LETVTSSSKQ TLLSPISVNR VVQLLERVHY ALN
0101: QGRDLLVVVS DSGKLSFLRF CNEMHRFFPV THVQLSSPGN LRNQLGQMLA IDSNGCFIAT SAYEDRLAMF SISMATDSDI IDKRIFYPPE IEGDSGVARS
0201: VHRTSISGTI WSMCFISKDL NQPSGGYNPV LAIILNRRGA VLTELVLLEW IIIENAVRVI SQYAEAGHVA HSIVEVPHSY GFAFLFRIGD ALLMDLRDAH
0301: NPCCVYKTSL NILPTSVEQN FAEESCRVHD GDEDGIFNVA ASALLELKDY VAKGDDPMNV DGDSGMVKST SKHVCALSWE PGNEKNSRMI FCVDTGELFM
0401: IEISFDSDGP KVNLSDCLYR GLSCKALLWF AGGFLAALVE MGDGMVLKLE QGRLVYRSPI QNIAPILDMS VVDCHDEEHD QMFACCGVTP EGSLRIIRSG
0501: ISVEKLLRTA PIYQGITGTW TVKMKVIDSY HSFLVLSFVE ETRVLSVGLS FTDVTDSVGF QPDVSTLACG VVDDGLLVQI HKNGVKLCLP TTVAHPEGIP
0601: LASPICTSWF PENISISLGA VGYNLIVVAT SSPCFLFILG VRSVSAYQYE IYEMQHVRLQ NEVSCISIPH KHFDKKPSTF LSNLVDNSSA AALLIGVNIG
0701: RIFVIGTHKP SVEILSFLPD EGLRILASGA ISLTNTLGTA VSGCVPQDAR LVLVDRFYVL SGLRNGMLLR FELPAASMVF SSELSSHSPS TNINSPVNLQ
0801: LIAIRRIGIT PVFLVPLSDS LEADIIALSD RPWLLQSARH SLSYTSISFQ PSTHVTPVCS MECPMGILFV AENSLHLVEM VHSKRLNVQK FYLGGTPRKV
0901: LYHSESRLLL VMRTELSQDT YSSDICCVDP LSGSVLSSFK LELGETGKSM ELVRVVNEQV LVIGTSLSSG PAMMPSGEAE STKGRLIVLC LEHMQNSDSG
1001: SMTFCSKAGS SSQRTSPFRE IVGYAAEQLS GSSLCSSPDD TSCDGVRLEE SEAWQLRLAY TATWPGMVLA ICPYLDRYFL ASAGNSFYVC GFPNDNPQRV
1101: RRFAVGRTRF MIMSLTAHFT RIAVGDCRDG VVFYSYHEDS RKLEQLYCDP EQRLVADCIL MDVDTAVVSD RKGSIAVLSC SNHLEDNASP ECNLTLNCSY
1201: YMGEIAMSIK KGSFSYKLPA DDVLKGCDGS NTIIDFSENS IMAGTLLGSI IMLIPISREE HELLEAVQAR LAVHQLTAPI LGNDHNEFRS RENSVRKAGV
1301: SKILDGDMLA QFLELTSMQQ EAVLALPLGS LETVTSSSKQ TLLSPISVNR VVQLLERVHY ALN
0001: MAAPEDESSA QSQSSPATAA PTPPPSSSPS SAGDHYLAKC ILRPSVVLQV AYGYFRSPSS RDIVFGKETC IELVVIGEDG IVESVCEQYV FGTIKDLAVI
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
Arabidopsis Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:UniProtKB/TrEMBL;Acc:Q84R20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.