Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plasma membrane 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0203700-01 | Rice | cytosol, nucleus | 30.22 | 61.26 |
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 60.44 | 59.87 |
| TraesCS2B01G258400.1 | Wheat | cytosol, nucleus | 50.07 | 55.91 |
| KXG34639 | Sorghum | plastid | 56.15 | 55.69 |
| Zm00001d019115_P048 | Maize | plastid | 55.26 | 55.01 |
| KRG96340 | Soybean | nucleus, plastid | 56.3 | 54.79 |
| KRH68075 | Soybean | nucleus, plastid | 56.22 | 54.72 |
| HORVU2Hr1G055870.14 | Barley | plastid | 54.74 | 54.34 |
| TraesCS2A01G243300.3 | Wheat | plastid | 54.37 | 53.93 |
| TraesCS2D01G245600.6 | Wheat | plastid | 54.3 | 53.86 |
| CDY08477 | Canola | nucleus | 54.07 | 53.68 |
| Solyc10g080630.1.1 | Tomato | nucleus | 55.33 | 53.63 |
| AT3G11960.3 | Thale cress | nucleus | 54.67 | 53.52 |
| CDX73841 | Canola | nucleus, plastid | 52.89 | 53.24 |
| Bra001431.1-P | Field mustard | nucleus, plastid | 52.89 | 53.24 |
| CDY00750 | Canola | nucleus | 52.37 | 52.8 |
| CDY01074 | Canola | nucleus | 52.96 | 52.61 |
| Bra034797.1-P | Field mustard | nucleus | 52.96 | 49.24 |
| Os07t0203800-01 | Rice | cytosol, plastid | 8.22 | 39.5 |
| GSMUA_Achr9P30350_001 | Banana | mitochondrion | 4.37 | 20.49 |
| GSMUA_Achr9P30340_001 | Banana | cytosol | 10.59 | 20.43 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 15.26 | 18.92 |
| GSMUA_Achr6P19780_001 | Banana | cytosol | 12.74 | 17.6 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:Cleavage/polyA-sp_fac_asu_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr9G11080_001 |
| EnsemblPlants:GSMUA_Achr9P11080_001 | EnsemblPlants:GSMUA_Achr9T11080_001 | InterPro:IPR015943 | UniProt:M0TZB7 | PFAM:PF03178 | PFAM:PF10433 |
| PANTHER:PTHR10644 | PANTHER:PTHR10644:SF6 | UniParc:UPI0002954F2E | InterPro:WD40/YVTN_repeat-like_dom_sf | SEG:seg | : |
Description
cleavage and polyadenylation specificity factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G11080_001]
Coordinates
chr9:-:7186597..7208223
Molecular Weight (calculated)
147024.0 Da
IEP (calculated)
6.042
GRAVY (calculated)
0.117
Length
1350 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGEDESAARG GHFGSAPRGS RGVHYLAKCV LRGSAILHAV QGHIRSPYSS DIVFGKETSL ELASINEDGI VQSIFEQSLF GAIKDLAILP WNNRFQEHAH
0101: QAQGKDLLVV LSDSGKLSFL TFCSTMHRFF AVTHIELSKP GNVVHQLGRM LAVDPRGCFV AVSAYEDRFA LFDVSMISDS NIGYEVKGSS GQDTLGTSIR
0201: GTIWSMCFIS DGTYQIEGYH SILAIVMHRC SFINELLLFG YNRHAHAIQV ISWYSETGPL AINISAIPHF PGFAILFRIG EMLLMDLRDP QNICCLHKIN
0301: LNIPSLVEDR SFVEESCRAL DDDEGMFNVA ACALLELRDS GPDMFKVDDP MSIDSGGGKG SSSSKLVCSW TWRPGNSMDP KLIFCLDTGE LYMVEIYSHT
0401: EGININLSEC LYRGSPCKAL LWVKCGLIAG LVEMGDGFVL KLEHAKLFYK SSIQNIAPIL DVSIADYHDE KQDQMFACCG MNPEGSLRII RSGISVERLL
0501: RTAPIYQGVT GTWTLRMKQS DPYHSFLVLS FVEETRILSV GLSFNDVTDA VGFQSDVCTL ACGLFADGVL VQIHRSGIRL CLPTTSAHPG GVPLSLPICA
0601: SWSPGSRTIS VGAVGQNLVI IATSNPCFLS IIGVRSLSTY NFEVYEIQHV RLQYEVSCIS IPLKNTNNKH IASEARLANK DHEVSHFDNF DINMAFVIGT
0701: HKPSVEVLSF ANEEAFRVLA TGTIAVNNAL GSPISGCIPE DVRLVSVDHP YVLAGLRNGM LLRFDSSSIV ANLNSYNSVT EQAKNCIPIF LQLIAIRRIG
0801: ITPAVLVPLK DSLDADIIVL SDRPWVLHAA RHSLAYTSIS FQPATHVTPV CSVDCPKGVL FVAENSLHLV EMVHCKRLNV QKFSIDGTPR KVLYHSESKT
0901: LLVLRTGLGG GSCSSDVCRV DPFSGTLLSK FQCEPGETAK CMQIVKVGKE QVLVVGTSQS VGRIIMPSGE AESTKGRLIV LSLDSAQNYS EGSPLIYCSN
1001: MDVSSQAGSP FGEIVGYSAE QLSSSSHCSS QGDPCSDGIH LDEIGAGQLR LVSQATSSGA VLAVCPYLDQ YVLASAGNTL NVFGFANENP QRLRKFAVGR
1101: TRFTITCLRT HLTRIAVGDC RDGILFYSYH EDVRKLELLY SDPVQRLVAD CALMDCDTAV VSDRRGNISV LSCPSSLEVS EYPEKNLVLN CSFYMGETVM
1201: SIQKASISCK LPVDNVLNGS DGVERVLESS YNSVVASTLL GSVFVLIPIT SEEHALLESV QARLAVHWLT CPVLGNEHKE YRGRGLPAGV PTILDGDMLM
1301: QFLELTSLQQ ESVLASPGSS THASASDLHQ SPLSVNMVVQ LLERIHYALN
0101: QAQGKDLLVV LSDSGKLSFL TFCSTMHRFF AVTHIELSKP GNVVHQLGRM LAVDPRGCFV AVSAYEDRFA LFDVSMISDS NIGYEVKGSS GQDTLGTSIR
0201: GTIWSMCFIS DGTYQIEGYH SILAIVMHRC SFINELLLFG YNRHAHAIQV ISWYSETGPL AINISAIPHF PGFAILFRIG EMLLMDLRDP QNICCLHKIN
0301: LNIPSLVEDR SFVEESCRAL DDDEGMFNVA ACALLELRDS GPDMFKVDDP MSIDSGGGKG SSSSKLVCSW TWRPGNSMDP KLIFCLDTGE LYMVEIYSHT
0401: EGININLSEC LYRGSPCKAL LWVKCGLIAG LVEMGDGFVL KLEHAKLFYK SSIQNIAPIL DVSIADYHDE KQDQMFACCG MNPEGSLRII RSGISVERLL
0501: RTAPIYQGVT GTWTLRMKQS DPYHSFLVLS FVEETRILSV GLSFNDVTDA VGFQSDVCTL ACGLFADGVL VQIHRSGIRL CLPTTSAHPG GVPLSLPICA
0601: SWSPGSRTIS VGAVGQNLVI IATSNPCFLS IIGVRSLSTY NFEVYEIQHV RLQYEVSCIS IPLKNTNNKH IASEARLANK DHEVSHFDNF DINMAFVIGT
0701: HKPSVEVLSF ANEEAFRVLA TGTIAVNNAL GSPISGCIPE DVRLVSVDHP YVLAGLRNGM LLRFDSSSIV ANLNSYNSVT EQAKNCIPIF LQLIAIRRIG
0801: ITPAVLVPLK DSLDADIIVL SDRPWVLHAA RHSLAYTSIS FQPATHVTPV CSVDCPKGVL FVAENSLHLV EMVHCKRLNV QKFSIDGTPR KVLYHSESKT
0901: LLVLRTGLGG GSCSSDVCRV DPFSGTLLSK FQCEPGETAK CMQIVKVGKE QVLVVGTSQS VGRIIMPSGE AESTKGRLIV LSLDSAQNYS EGSPLIYCSN
1001: MDVSSQAGSP FGEIVGYSAE QLSSSSHCSS QGDPCSDGIH LDEIGAGQLR LVSQATSSGA VLAVCPYLDQ YVLASAGNTL NVFGFANENP QRLRKFAVGR
1101: TRFTITCLRT HLTRIAVGDC RDGILFYSYH EDVRKLELLY SDPVQRLVAD CALMDCDTAV VSDRRGNISV LSCPSSLEVS EYPEKNLVLN CSFYMGETVM
1201: SIQKASISCK LPVDNVLNGS DGVERVLESS YNSVVASTLL GSVFVLIPIT SEEHALLESV QARLAVHWLT CPVLGNEHKE YRGRGLPAGV PTILDGDMLM
1301: QFLELTSLQQ ESVLASPGSS THASASDLHQ SPLSVNMVVQ LLERIHYALN
0001: MAAPEDESSA QSQSSPATAA PTPPPSSSPS SAGDHYLAKC ILRPSVVLQV AYGYFRSPSS RDIVFGKETC IELVVIGEDG IVESVCEQYV FGTIKDLAVI
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
Arabidopsis Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:UniProtKB/TrEMBL;Acc:Q84R20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.