Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96340 | Soybean | nucleus, plastid | 90.27 | 90.27 |
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 65.1 | 66.25 |
| Solyc10g080630.1.1 | Tomato | nucleus | 59.26 | 59.01 |
| CDY08477 | Canola | nucleus | 57.39 | 58.53 |
| Bra001431.1-P | Field mustard | nucleus, plastid | 56.52 | 58.46 |
| CDX73841 | Canola | nucleus, plastid | 56.52 | 58.46 |
| CDY01074 | Canola | nucleus | 57.17 | 58.35 |
| AT3G11960.3 | Thale cress | nucleus | 57.75 | 58.09 |
| CDY00750 | Canola | nucleus | 55.08 | 57.06 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 54.72 | 56.22 |
| Bra034797.1-P | Field mustard | nucleus | 57.32 | 54.75 |
| Os07t0203700-01 | Rice | cytosol, nucleus | 24.08 | 50.15 |
| KXG34639 | Sorghum | plastid | 48.23 | 49.16 |
| TraesCS2B01G258400.1 | Wheat | cytosol, nucleus | 42.68 | 48.97 |
| Zm00001d019115_P048 | Maize | plastid | 47.58 | 48.67 |
| TraesCS2A01G243300.3 | Wheat | plastid | 46.86 | 47.76 |
| TraesCS2D01G245600.6 | Wheat | plastid | 46.86 | 47.76 |
| HORVU2Hr1G055870.14 | Barley | plastid | 46.65 | 47.57 |
| Os07t0203800-01 | Rice | cytosol, plastid | 6.99 | 34.52 |
| KRH43086 | Soybean | nucleus | 3.17 | 21.67 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 7.57 | 21.0 |
| KRH59212 | Soybean | cytosol, nucleus | 7.14 | 18.57 |
| KRH36214 | Soybean | nucleus | 16.01 | 18.29 |
| KRH25071 | Soybean | nucleus | 7.86 | 18.26 |
| KRG92964 | Soybean | nucleus | 15.79 | 18.04 |
Protein Annotations
| EntrezGene:100806799 | Gene3D:2.130.10.10 | MapMan:35.1 | EMBL:ACUP02002098 | InterPro:Cleavage/polyA-sp_fac_asu_C | EnsemblPlantsGene:GLYMA_03G206600 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | UniProt:I1JQE1 | InterPro:IPR015943 | EnsemblPlants:KRH68075 | ProteinID:KRH68075 |
| ProteinID:KRH68075.1 | PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF6 | UniParc:UPI00023C148D |
| InterPro:WD40/YVTN_repeat-like_dom_sf | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:41412272..41426946
Molecular Weight (calculated)
152547.0 Da
IEP (calculated)
5.419
GRAVY (calculated)
0.033
Length
1387 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAVSEEECSS ANSGSGPSSS SSSASARYYL SKCVLRGSVV LQVLHAHIRS PSSNDVIFGK ETSIELVVID EDGNVQSVCD QPVFGTVKDL AILPWNEKFR
0101: VARDPQLWGK DLLVATSDSG KLSLLTFCNE MHRFIPVTHI QLSNPGNQIY LPGRKLAVDS SGCFIASSAY EDRLALFSLS MSSGDIIDER IVYPSENEGT
0201: ASTSRSIQRI GIRGTIWSIC FISQDSRQPS KEHNPVLAVI INRRGALLNE LLLLEWNVKA HKIFVISQYV EAGPLAHDIV EVPNSGGLAF LFRAGDVLLM
0301: DLRDHRNPSC VCKTNLNFLP NAMEEQTYVE ESCKLHDVDD ERFSVAACAL LELSDYDPMC IDSDNGGANS GYKYICSWSW EPENNRDPRM IFCVDTGEFF
0401: MIEVLFDSEG PKVNLSECLY KGLPCKALLW VESGYLAALV EMGDGMVLKL EDGRLCYINP IQNIAPILDM EVVDYHDEKQ DQMFACCGVA PEGSLRIIRN
0501: GINVENLHRT ASIYQGVTGT WTVRMRVTDS HHSFLVLSFV EETRILSVGL SFTDVTDSVG FQPNVCTLAC GLVTDGLLVQ IHKSTVKLCL PTKAAHSEGI
0601: PLSSPICTSW SPDNVSISLG AVGHNFIVVS TSNPCFLFIL GVRLLSAYQY EIYEMQHLVL QNELSCISIP GQEIEQKQSN SSISANNSSI SSFQIQSGVD
0701: INKTFVIGTH RPSVEIWYFA PGGGITVVAC GTISLTNTVG TAISGCVPQD VRLVFVGKYY VLAGLRNGML LRFEWPAEPC PSSPINIVDT ALSSINLVNS
0801: VTNAFDKRND FPSMLQLIAI RRIGITPVFL VPLGDTLDAD IITLSDRPWL LHSARHSLSY SSISFQPSTH VTPVCSVECP KGILFVAENS LHLVEMVHSK
0901: RLNMQKFHLE GTPRKVLYHD ESKMLLVMRT ELNCGTCLSD ICIMDPLSGS VLSSFRLELG ETGKSMELVR VGSEQVLVVG TSLSSGPHTM ATGEAESCKG
1001: RLLVLCLDHV QNSDSGSVTF CSKAGSSSQK TSPFREIVTY APEQLSSSSL GSSPDDNSSD GIKLDENEVW QFRLTFATKW PGVVLKICPY LDRYFLATAG
1101: NAFYVCGFPN DNPQRVRRYA MGRARFMITS LTAHFTRIAV GDCRDGILLY SYHEEAKKLE LLYNDPSLRL VADCILMDAD TAVVSDRKGS IAVLCSDHLE
1201: DNAGAQCNMA LSCAYFMAEI AMSIKKGSYS YRLPADDVLQ GGNGPKTNVD SLQNTIIATT LLGSIMIFIP LSREEYELLE AVQARLVVHH LTAPVLGNDH
1301: NEFRSRENRV GVPKILDGDM LTQFLELTSM QQKMILSLEL PDMVKPSLKP LLPSHVSVNQ NAEHAYAVLN NIVRQRLRVC FSKCCQI
0101: VARDPQLWGK DLLVATSDSG KLSLLTFCNE MHRFIPVTHI QLSNPGNQIY LPGRKLAVDS SGCFIASSAY EDRLALFSLS MSSGDIIDER IVYPSENEGT
0201: ASTSRSIQRI GIRGTIWSIC FISQDSRQPS KEHNPVLAVI INRRGALLNE LLLLEWNVKA HKIFVISQYV EAGPLAHDIV EVPNSGGLAF LFRAGDVLLM
0301: DLRDHRNPSC VCKTNLNFLP NAMEEQTYVE ESCKLHDVDD ERFSVAACAL LELSDYDPMC IDSDNGGANS GYKYICSWSW EPENNRDPRM IFCVDTGEFF
0401: MIEVLFDSEG PKVNLSECLY KGLPCKALLW VESGYLAALV EMGDGMVLKL EDGRLCYINP IQNIAPILDM EVVDYHDEKQ DQMFACCGVA PEGSLRIIRN
0501: GINVENLHRT ASIYQGVTGT WTVRMRVTDS HHSFLVLSFV EETRILSVGL SFTDVTDSVG FQPNVCTLAC GLVTDGLLVQ IHKSTVKLCL PTKAAHSEGI
0601: PLSSPICTSW SPDNVSISLG AVGHNFIVVS TSNPCFLFIL GVRLLSAYQY EIYEMQHLVL QNELSCISIP GQEIEQKQSN SSISANNSSI SSFQIQSGVD
0701: INKTFVIGTH RPSVEIWYFA PGGGITVVAC GTISLTNTVG TAISGCVPQD VRLVFVGKYY VLAGLRNGML LRFEWPAEPC PSSPINIVDT ALSSINLVNS
0801: VTNAFDKRND FPSMLQLIAI RRIGITPVFL VPLGDTLDAD IITLSDRPWL LHSARHSLSY SSISFQPSTH VTPVCSVECP KGILFVAENS LHLVEMVHSK
0901: RLNMQKFHLE GTPRKVLYHD ESKMLLVMRT ELNCGTCLSD ICIMDPLSGS VLSSFRLELG ETGKSMELVR VGSEQVLVVG TSLSSGPHTM ATGEAESCKG
1001: RLLVLCLDHV QNSDSGSVTF CSKAGSSSQK TSPFREIVTY APEQLSSSSL GSSPDDNSSD GIKLDENEVW QFRLTFATKW PGVVLKICPY LDRYFLATAG
1101: NAFYVCGFPN DNPQRVRRYA MGRARFMITS LTAHFTRIAV GDCRDGILLY SYHEEAKKLE LLYNDPSLRL VADCILMDAD TAVVSDRKGS IAVLCSDHLE
1201: DNAGAQCNMA LSCAYFMAEI AMSIKKGSYS YRLPADDVLQ GGNGPKTNVD SLQNTIIATT LLGSIMIFIP LSREEYELLE AVQARLVVHH LTAPVLGNDH
1301: NEFRSRENRV GVPKILDGDM LTQFLELTSM QQKMILSLEL PDMVKPSLKP LLPSHVSVNQ NAEHAYAVLN NIVRQRLRVC FSKCCQI
0001: MAAPEDESSA QSQSSPATAA PTPPPSSSPS SAGDHYLAKC ILRPSVVLQV AYGYFRSPSS RDIVFGKETC IELVVIGEDG IVESVCEQYV FGTIKDLAVI
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
Arabidopsis Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:UniProtKB/TrEMBL;Acc:Q84R20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.