CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2
cytosol 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36214	Soybean	nucleus	97.94	97.94
VIT_00s0317g00100.t01	Wine grape	endoplasmic reticulum	91.35	91.35
PGSC0003DMT400077607	Potato	nucleus	88.39	88.6
AT3G55220.1	Thale cress	nucleus, vacuole	87.4	87.4
AT3G55200.1	Thale cress	nucleus, vacuole	87.4	87.4
Bra034172.1-P	Field mustard	nucleus, plastid, vacuole	87.23	87.23
CDY36309	Canola	cytosol, nucleus, plastid	84.84	87.21
Solyc04g010260.2.1	Tomato	nucleus	84.35	87.15
CDY36325	Canola	nucleus, plastid, vacuole	84.93	86.86
GSMUA_Achr9P30340_001	Banana	cytosol	49.59	86.0
Os02t0137400-01	Rice	nucleus	57.91	81.93
GSMUA_Achr6P19780_001	Banana	cytosol	65.65	81.58
HORVU6Hr1G019130.1	Barley	mitochondrion	80.97	80.11
EES04483	Sorghum	mitochondrion	81.22	80.03
Zm00001d015208_P003	Maize	extracellular, plasma membrane	80.97	79.98
TraesCS6A01G107200.1	Wheat	nucleus	80.72	79.87
TraesCS6B01G135400.1	Wheat	unclear	80.72	79.87
TraesCS6D01G095000.1	Wheat	mitochondrion	80.64	79.79
VIT_15s0107g00230.t01	Wine grape	nucleus	8.4	78.46
VIT_15s0107g00220.t01	Wine grape	cytosol	8.24	68.97
KRH25071	Soybean	nucleus	11.37	23.12
KRH59213	Soybean	cytosol, plasma membrane, plastid	9.23	22.4
KRH59212	Soybean	cytosol, nucleus	9.8	22.33
KRH43086	Soybean	nucleus	3.71	22.17
KRH68075	Soybean	nucleus, plastid	18.04	15.79
KRG96340	Soybean	nucleus, plastid	18.04	15.79

Protein Annotations

EntrezGene:100800457	MapMan:16.4.1.2.4.3	Gene3D:2.130.10.10	EMBL:ACUP02012773	InterPro:Cleavage/polyA-sp_fac_asu_C	ncoils:Coil
EnsemblPlantsGene:GLYMA_20G240500	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	UniProt:I1NJ61	InterPro:IPR015943	EnsemblPlants:KRG92964
ProteinID:KRG92964	ProteinID:KRG92964.1	PFAM:PF03178	PFAM:PF10433	PANTHER:PTHR10644	PANTHER:PTHR10644:SF1
InterPro:Quinoprotein_ADH-like_supfam	SUPFAM:SSF50998	UniParc:UPI000233DE25	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:+:47168703..47174268

Molecular Weight (calculated)

135103.0 Da

IEP (calculated)

5.277

GRAVY (calculated)

-0.162

Length

1214 amino acids

Sequence
(BLAST)

0001: MYLYSLTLQR PTGIICAING NFSGGKSQEI VVARGKVLDL LRPDDNGRIQ TILSVEIFGA IRSLAQFRLM GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: IHQETFGKSG CRRIVPGQYL AIDPKGRAVM IGACEKQKLV YVLNRDTAAR LTISSPLEAH KSHTLVYSIC GVDCGFENPI FAAIELDYSE ADQDSTGLAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSEQVDNG ANLLVTVPGG GDGPSGVLVC AENFVIYKNQ AHPEVRAVIP RRTDLPAERG VLIVSAAMHK LKNMFFFLLQ
0301: TEYGDIFKVT LEHNNDRVSE LKIKYFDTIP VTASMCVLKS GFLFAASEFG NHALYQFKSI GDEDDVEASS ATLMETEQGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPIMDMKV SNLFEEETPQ IYTLCGRGPR SSLRILRTGL AVSEMAVSKL PGIPSAVWTV KKNAIDEFDA YIVVSFTNAT LVLSIGETVE EVSDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR TISKVGSNRL QVVIALSGGE LIYFEVDVTG QLMEVEKHEM SGDVACLDIA PVPEGRQRSR
0601: FLAVGSYDKT IRILSLDPDD CMQALSVQSV SSAPESLLFL EVQASVGGED GADHPASLFL NAGLQNGVMF RTVVDMVTGQ LSDSRSRFLG LRAPKLFPII
0701: VRGKRAMLCL SSRPWLGYIH QGHFLLTPLS YETLEYAASF SSDQCVEGVV AVAGEALRIF TIERLGETFN ETVIPLRYTP RKFVLQPKRK LLVMIESDQG
0801: ALTAEEREAA RKECFESAQA GENGTESADQ MENGGEDEDK DDPLSDEHYG YPKAESDKWA SCIRVLDPRT GNTTCLLELQ ENEAAFSICT INFHDKEYGT
0901: LLAVGTAKGL QFLPKRTITA GFIHIYRFVE DGRSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKRRLLRKCE NKLFPNTIVS IHAYRDRIYV
1001: GDVQESFHYC KYRRDENQLY IFADDCVPRW LTASYHIDFD TMAGADKFGN IYFVRLPQDV SDEIEEDPTG GRIKWEQGKL NGAPNKVEEI VQFHIGDVVT
1101: CLQKASLIPG GGECIVFGTV MGSVGALHAF TSRDDVDFFS HLEMHMRQDH PPLCGRDHMA YRSAYFPVKD VIDGDLCEQY PTLPMDLQRK IADELDRTPG
1201: EILKKLEEVR NKII

Best Arabidopsis Sequence Match ( AT3G55200.2 )
(BLAST)

0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII

Arabidopsis Description

SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.