Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P30340_001 | Banana | cytosol | 53.79 | 11.14 |
| Os02t0137400-01 | Rice | nucleus | 64.83 | 10.96 |
| PGSC0003DMT400077607 | Potato | nucleus | 73.1 | 8.75 |
| VIT_00s0317g00100.t01 | Wine grape | endoplasmic reticulum | 73.1 | 8.73 |
| Solyc04g010260.2.1 | Tomato | nucleus | 69.66 | 8.6 |
| Bra034172.1-P | Field mustard | nucleus, plastid, vacuole | 70.34 | 8.4 |
| AT3G55220.1 | Thale cress | nucleus, vacuole | 69.66 | 8.32 |
| AT3G55200.1 | Thale cress | nucleus, vacuole | 69.66 | 8.32 |
| KRG92964 | Soybean | nucleus | 68.97 | 8.24 |
| CDY36309 | Canola | cytosol, nucleus, plastid | 66.9 | 8.21 |
| GSMUA_Achr6P19780_001 | Banana | cytosol | 55.17 | 8.19 |
| CDY36325 | Canola | nucleus, plastid, vacuole | 66.9 | 8.17 |
| KRH36214 | Soybean | nucleus | 66.21 | 7.91 |
| HORVU6Hr1G019130.1 | Barley | mitochondrion | 66.21 | 7.82 |
| Zm00001d015208_P003 | Maize | extracellular, plasma membrane | 64.83 | 7.65 |
| TraesCS6A01G107200.1 | Wheat | nucleus | 62.76 | 7.42 |
| TraesCS6B01G135400.1 | Wheat | unclear | 62.76 | 7.42 |
| TraesCS6D01G095000.1 | Wheat | mitochondrion | 62.76 | 7.42 |
| EES04483 | Sorghum | mitochondrion | 61.38 | 7.22 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 26.21 | 3.49 |
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 22.07 | 2.35 |
| VIT_15s0024g01220.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_15s0107g00230.t01 | Wine grape | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | ProteinID:CCB60878 | ProteinID:CCB60878.1 | UniProt:F6I1R1 | EMBL:FN596514 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR015943 | PFAM:PF10433 | PANTHER:PTHR10644 | UniParc:UPI000210A7FD |
| ArrayExpress:VIT_15s0107g00220 | EnsemblPlantsGene:VIT_15s0107g00220 | EnsemblPlants:VIT_15s0107g00220.t01 | InterPro:WD40/YVTN_repeat-like_dom_sf | : | : |
Description
No Description!
Coordinates
chr15:+:8377024..8378172
Molecular Weight (calculated)
15895.2 Da
IEP (calculated)
4.956
GRAVY (calculated)
-0.102
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLALIRAPF LRILEFGDDG KNVNVVSFAN ATLMPSIGDE VEKVSDSGFL DTTLSLAVSL IGDDSLMQIH NSGIRHIREG RRINEWRTPG KRTIVKVGSN
101: RLQVAFAPSG GELIYFEMDM TGQLMEVEKH EMSGDEACLG HCPGC
101: RLQVAFAPSG GELIYFEMDM TGQLMEVEKH EMSGDEACLG HCPGC
0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII
Arabidopsis Description
SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]
SUBAcon: [vacuole,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.