CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plastid, nucleus

Predictor Summary:

nucleus 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid, vacuole
Any Predictor:	nucleus, plastid, vacuole
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36309	Canola	cytosol, nucleus, plastid	97.05	97.54
Bra034172.1-P	Field mustard	nucleus, plastid, vacuole	98.74	96.54
AT3G55220.1	Thale cress	nucleus, vacuole	95.62	93.49
AT3G55200.1	Thale cress	nucleus, vacuole	95.62	93.49
VIT_00s0317g00100.t01	Wine grape	endoplasmic reticulum	88.29	86.33
KRH36214	Soybean	nucleus	87.87	85.91
KRG92964	Soybean	nucleus	86.86	84.93
GSMUA_Achr9P30340_001	Banana	cytosol	49.62	84.14
PGSC0003DMT400077607	Potato	nucleus	85.43	83.73
Solyc04g010260.2.1	Tomato	nucleus	82.31	83.15
GSMUA_Achr6P19780_001	Banana	cytosol	65.88	80.04
Os02t0137400-01	Rice	nucleus	57.71	79.84
TraesCS6B01G135400.1	Wheat	unclear	80.29	77.67
TraesCS6D01G095000.1	Wheat	mitochondrion	80.2	77.59
TraesCS6A01G107200.1	Wheat	nucleus	80.12	77.51
EES04483	Sorghum	mitochondrion	80.29	77.35
HORVU6Hr1G019130.1	Barley	mitochondrion	79.78	77.18
Zm00001d015208_P003	Maize	extracellular, plasma membrane	79.53	76.81
VIT_15s0107g00230.t01	Wine grape	nucleus	8.26	75.38
VIT_15s0107g00220.t01	Wine grape	cytosol	8.17	66.9
CDY69266	Canola	nucleus	10.45	22.63
CDY68484	Canola	cytosol, endoplasmic reticulum, vacuole	10.11	22.43
CDY57060	Canola	cytosol, nucleus, plasma membrane	20.72	22.3
CDX76416	Canola	cytosol	20.64	21.72
CDY54326	Canola	cytosol	3.88	20.09
CDY69930	Canola	plastid	7.92	20.04
CDY50606	Canola	golgi, mitochondrion, plasma membrane	5.14	19.3
CDY70585	Canola	plastid	5.39	18.03
CDX73841	Canola	nucleus, plastid	19.8	17.52
CDY00750	Canola	nucleus	19.63	17.4
CDY08477	Canola	nucleus	19.04	16.62
CDY01074	Canola	nucleus	18.96	16.56

Protein Annotations

MapMan:16.4.1.2.4.3	Gene3D:2.130.10.10	GO:A0A078HD66	UniProt:A0A078HD66	EnsemblPlants:CDY36325	ProteinID:CDY36325
ProteinID:CDY36325.1	InterPro:Cleavage/polyA-sp_fac_asu_C	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00060302001
InterPro:IPR015943	PFAM:PF03178	PFAM:PF10433	PANTHER:PTHR10644	PANTHER:PTHR10644:SF1	SUPFAM:SSF50978
UniParc:UPI0004EE8A9B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaA01g30930DBnaA01g30930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HD66]

Coordinates

chrLK032372:+:348289..352362

Molecular Weight (calculated)

131762.0 Da

IEP (calculated)

5.102

GRAVY (calculated)

-0.203

Length

1187 amino acids

Sequence
(BLAST)

0001: MYLYSLTLQQ ATGITCAING NFSGGKAQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GGQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQDT AARLTISSPL EAHKSHTICY SVCGVDCGFD NPVFAAVELD YSEADQDPTG QASSEAQKHL TFYELDLGLN HVSRKWSEPV
0201: DNGANMLVTV PGGADGPSGV LVCAENFVIY KNQGHPDVRA VIPRRADLPA ERGVLVVSAA MHKQKTTFFF LLQTEYGDVF KATLDHDGDH VSELKIKYFD
0301: TIPVAASICV LKLGFLFAAS EFGNHGLYQF QAIGDEPDVE SSSSNLMETE DGFQPVFFQP RRLKNLVRID QVESLMPLMD MKVLNLFEEE TPQIFSLCGR
0401: GPRSSLRILR PGLAISEMAV SQLPGQPSAV WTVKKNVSDE FDAYIVVSFT NATLVLSIGE TVEEVNDSGF LDTTPSLAVS LIGDDSLMQV HPNGIRHIRE
0501: DGRINEWRTP GKRSIVKVGY NRLQVVIALS GGELIYFEAD MTGQLMEVEK HEMSGDVACL DIAPVPEGRQ RSRFLAVGSY DNTVRILSLD PDDCLQILSV
0601: QSVSSAPESL LFLEVQASIG GDDGADHPAS LFLNSGLQNG VLFRTVVDMV TGQLSDSRSR FLGLKPPKLF AISVRGRSAM LCLSSRPWLG YIHRGHFHLT
0701: PLSYETLEFA APFSSDQCAE GVVSVAGDAL RIFMFDRLGE TFNETMVPLR YTPRKFVVHP KKKLLVIVES DQGAFTAEER EAARKECFQA GGAGENGNGS
0801: ADQMENGGDD EDKEDPLCDE QYGYPKAESE KWVSCIRVVD PKTADTTCLL ELQDNEAAYS VCTVNFHDKE YGTLLAVGTV KGMQFWPKKR LVAGFIHIYR
0901: FVEEGRKLEL LHKTQVEGVP LALCQFQGRL LAGIGPVLRL YDLGKKRLLR KCENKLFPNT IISIQTYRDR IYVGDIQESF HYCKYRRDEN QLYIFADDCV
1001: PRWLTASHHV DFDTMAGADK FGNIYFVRLP QDVSEEIEED PTGGKIKWEQ GKLNGAPNKV DEIVQFHVGD VVTCLQKASM IPGGSESIMY GTVMGSIGAL
1101: HAFTSRDDVD FFSHLEMHMR QEYPPLCGRD HMAYRSAYFP VKDVIDGDLC EQFPTLPIDL QRKIADELDR TPAEILKKLE DARNKII

Best Arabidopsis Sequence Match ( AT3G55200.2 )
(BLAST)

0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII

Arabidopsis Description

SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.