Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01074 | Canola | nucleus | 96.1 | 96.17 |
| Bra034797.1-P | Field mustard | nucleus | 93.75 | 87.81 |
| CDX73841 | Canola | nucleus, plastid | 81.91 | 83.07 |
| AT3G11960.3 | Thale cress | nucleus | 83.82 | 82.67 |
| CDY00750 | Canola | nucleus | 78.9 | 80.13 |
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 63.38 | 63.24 |
| KRH68075 | Soybean | nucleus, plastid | 58.53 | 57.39 |
| KRG96340 | Soybean | nucleus, plastid | 58.46 | 57.32 |
| Solyc10g080630.1.1 | Tomato | nucleus | 58.01 | 56.64 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 53.68 | 54.07 |
| Os07t0203700-01 | Rice | cytosol, nucleus | 24.19 | 49.4 |
| KXG34639 | Sorghum | plastid | 47.43 | 47.39 |
| Zm00001d019115_P048 | Maize | plastid | 46.99 | 47.12 |
| TraesCS2B01G258400.1 | Wheat | cytosol, nucleus | 41.25 | 46.4 |
| HORVU2Hr1G055870.14 | Barley | plastid | 46.18 | 46.18 |
| TraesCS2D01G245600.6 | Wheat | plastid | 45.96 | 45.92 |
| TraesCS2A01G243300.3 | Wheat | plastid | 45.88 | 45.85 |
| Os07t0203800-01 | Rice | cytosol, plastid | 7.21 | 34.88 |
| CDY36325 | Canola | nucleus, plastid, vacuole | 16.62 | 19.04 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 4.41 | 18.99 |
| CDY36309 | Canola | cytosol, nucleus, plastid | 16.32 | 18.8 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 14.12 | 17.41 |
| CDY69930 | Canola | plastid | 5.88 | 17.06 |
| CDX76416 | Canola | cytosol | 13.68 | 16.49 |
| CDY54326 | Canola | cytosol | 2.72 | 16.16 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 6.32 | 16.07 |
| CDY69266 | Canola | nucleus | 6.4 | 15.88 |
| CDY70585 | Canola | plastid | 3.68 | 14.08 |
Protein Annotations
| Gene3D:2.130.10.10 | Gene3D:3.30.980.30 | MapMan:35.1 | GO:A0A078F5T6 | UniProt:A0A078F5T6 | EnsemblPlants:CDY08477 |
| ProteinID:CDY08477 | ProteinID:CDY08477.1 | InterPro:Cleavage/polyA-sp_fac_asu_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00000245001 |
| InterPro:IPR015943 | PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF6 | UniParc:UPI0004EE7AC6 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | SEG:seg | : | : | : | : |
Description
BnaA05g27130DBnaA05g27130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5T6]
Coordinates
chrLK031986:-:330447..337557
Molecular Weight (calculated)
149109.0 Da
IEP (calculated)
5.120
GRAVY (calculated)
0.027
Length
1360 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAPEDESSA QSQSSSAAAA APTPPPPPSS AGDHYLAKCV IRPSVVLQVA YGYFRSRSSR DIVFGKETCI ELAVIGEDGV VESVCEQNVF GTIKDLAVIP
0101: QSNKPYSNSF QMGKDLLAVL SDSGKLSFLS FSNEMHRFSP IQHVQLSSPG NSRDQLGKML TSYYAICSGL FLAVSAYHDR FALFSLSTSS MADIILKRIF
0201: YPSEDGGKAS SEQAVSGTIW SMCFISKGFN ESMDYDPVLA IVLNRKGSLL NELVLFRWNV KEESICLISE YVEAGALAHS IVEVPHSSGF AFLLRMGDAL
0301: LMDLRDPQNP CCLVRTSLDL VPASLVEEQF LEESCRVQDG DDEGLFNVAA CALLELRDYD PMFIDNESDN GKLSSKHVSS WTWEPPEHNH NPRMIICLDD
0401: GEFFMFELIY EDDGVKVNVS ECLYKGLPCK EILWVEGVFL ATFAEMADGT VFKVGTEKLH WMSSIQNIAP ILDFSVVDDQ NEKRDQIFAC CGVTPEGSLR
0501: IIRSGINVEK LLKTAPVYQG ITGTWTVKMK LTDVYHSFLV LSFVEETRVL SVGLSFKDVT DSVGFQPDVC TLACGLVADG LLVQIHRDAI RLCMPTVDAH
0601: ADGIPVSSPF FSSWFPENVS ISLGAVGENL IVVSTSNPCF LSILGVKSVS SQCCEIYEIQ RVTLQYEVSC ISVPQKYIGK KRPRACAVDN SCSKAAIPSG
0701: MERGYTFLIG THKPSVEVVS FSEEDGGGVR VLASGRVSLT NTMGTVISGC IPQDVRLVLV DQVYVLSGLR NGMLLRFEWP PFSHSSGHCK EEMDSVASDL
0801: LLIATRRIGI TPVFLVPLSD SLDSDIIALS DRAWLLQTAR QSLSYTSISF QPSTHATPVC SPECPQGILF VAENCLHLVE MVHSKRLNAQ KFHLGGTPRK
0901: VIYHSESKLL IVMRTDLYDA CTSDICCVDP LSGSVLSSYK LKPGETGKSM ELVRVGNEQV LVVGTSLSFG PAILPSGEAE STRGRLIILC LEHTHNSDSG
1001: SMTICSKAGS SSQRTSPFRD VVGCTTEQLS SSSLCSSPDD NSYDGIKIDE SETWHLRLAC ATTWPGMVLA ICPYLDHFFL ASAGNAFYVC GFPNDSPERM
1101: KRFAVGRTRF MITSLRTYFT RIVVGDCRDG VLFYSYHEDV KKLHQIYCDP AQRLVGDCFL MDANSVAVSD RKGSIAILSC KDHSDFEYSN PESNLNLNCA
1201: YHMGEIAMAI KKGCNIYKLP ADDVLRSYGL SKSIDAADDT IIAGTLLGSI FVFAPISREE YELLEAVQAK LVVHPLTAPV LGNDHKEFRG RENPSQATKI
1301: LDGDMLAQFL ELTNRQQESV LSTPQPSSSA LKAISKQCSS PPLMLHQVVQ LLERVHYALH
0101: QSNKPYSNSF QMGKDLLAVL SDSGKLSFLS FSNEMHRFSP IQHVQLSSPG NSRDQLGKML TSYYAICSGL FLAVSAYHDR FALFSLSTSS MADIILKRIF
0201: YPSEDGGKAS SEQAVSGTIW SMCFISKGFN ESMDYDPVLA IVLNRKGSLL NELVLFRWNV KEESICLISE YVEAGALAHS IVEVPHSSGF AFLLRMGDAL
0301: LMDLRDPQNP CCLVRTSLDL VPASLVEEQF LEESCRVQDG DDEGLFNVAA CALLELRDYD PMFIDNESDN GKLSSKHVSS WTWEPPEHNH NPRMIICLDD
0401: GEFFMFELIY EDDGVKVNVS ECLYKGLPCK EILWVEGVFL ATFAEMADGT VFKVGTEKLH WMSSIQNIAP ILDFSVVDDQ NEKRDQIFAC CGVTPEGSLR
0501: IIRSGINVEK LLKTAPVYQG ITGTWTVKMK LTDVYHSFLV LSFVEETRVL SVGLSFKDVT DSVGFQPDVC TLACGLVADG LLVQIHRDAI RLCMPTVDAH
0601: ADGIPVSSPF FSSWFPENVS ISLGAVGENL IVVSTSNPCF LSILGVKSVS SQCCEIYEIQ RVTLQYEVSC ISVPQKYIGK KRPRACAVDN SCSKAAIPSG
0701: MERGYTFLIG THKPSVEVVS FSEEDGGGVR VLASGRVSLT NTMGTVISGC IPQDVRLVLV DQVYVLSGLR NGMLLRFEWP PFSHSSGHCK EEMDSVASDL
0801: LLIATRRIGI TPVFLVPLSD SLDSDIIALS DRAWLLQTAR QSLSYTSISF QPSTHATPVC SPECPQGILF VAENCLHLVE MVHSKRLNAQ KFHLGGTPRK
0901: VIYHSESKLL IVMRTDLYDA CTSDICCVDP LSGSVLSSYK LKPGETGKSM ELVRVGNEQV LVVGTSLSFG PAILPSGEAE STRGRLIILC LEHTHNSDSG
1001: SMTICSKAGS SSQRTSPFRD VVGCTTEQLS SSSLCSSPDD NSYDGIKIDE SETWHLRLAC ATTWPGMVLA ICPYLDHFFL ASAGNAFYVC GFPNDSPERM
1101: KRFAVGRTRF MITSLRTYFT RIVVGDCRDG VLFYSYHEDV KKLHQIYCDP AQRLVGDCFL MDANSVAVSD RKGSIAILSC KDHSDFEYSN PESNLNLNCA
1201: YHMGEIAMAI KKGCNIYKLP ADDVLRSYGL SKSIDAADDT IIAGTLLGSI FVFAPISREE YELLEAVQAK LVVHPLTAPV LGNDHKEFRG RENPSQATKI
1301: LDGDMLAQFL ELTNRQQESV LSTPQPSSSA LKAISKQCSS PPLMLHQVVQ LLERVHYALH
0001: MAAPEDESSA QSQSSPATAA PTPPPSSSPS SAGDHYLAKC ILRPSVVLQV AYGYFRSPSS RDIVFGKETC IELVVIGEDG IVESVCEQYV FGTIKDLAVI
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
Arabidopsis Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:UniProtKB/TrEMBL;Acc:Q84R20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.