Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76416 | Canola | cytosol | 97.1 | 94.95 |
| CDY70585 | Canola | plastid | 29.28 | 90.99 |
| AT4G21100.1 | Thale cress | nucleus | 89.3 | 90.53 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 42.79 | 88.22 |
| CDY69266 | Canola | nucleus | 43.7 | 87.96 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 39.53 | 87.2 |
| CDY69930 | Canola | plastid | 36.9 | 86.78 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 84.86 | 85.95 |
| Solyc02g021650.2.1 | Tomato | nucleus | 83.68 | 84.29 |
| KRH25071 | Soybean | nucleus | 44.79 | 82.75 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 81.32 | 82.37 |
| KRH59212 | Soybean | cytosol, nucleus | 38.71 | 80.11 |
| KRH43086 | Soybean | nucleus | 14.6 | 79.31 |
| KXG22678 | Sorghum | nucleus | 77.79 | 78.79 |
| Zm00001d039165_P046 | Maize | nucleus | 77.79 | 78.5 |
| TraesCS1B01G473400.1 | Wheat | nucleus | 77.24 | 78.17 |
| TraesCS1D01G445700.1 | Wheat | unclear | 77.15 | 78.07 |
| TraesCSU01G002300.1 | Wheat | golgi, plastid | 77.15 | 78.07 |
| Zm00001d009745_P023 | Maize | cytosol, nucleus, plasma membrane, plastid | 74.07 | 74.34 |
| HORVU1Hr1G094530.1 | Barley | nucleus, plastid | 76.88 | 74.13 |
| TraesCS3A01G210100.2 | Wheat | nucleus | 63.46 | 64.4 |
| TraesCS3B01G240600.1 | Wheat | cytosol | 60.11 | 64.12 |
| HORVU7Hr1G056620.1 | Barley | cytosol | 6.8 | 64.1 |
| HORVU3Hr1G050820.11 | Barley | plastid | 63.74 | 62.1 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 14.87 | 51.9 |
| HORVU7Hr1G056610.1 | Barley | cytosol | 9.34 | 51.76 |
| PGSC0003DMT400009595 | Potato | nucleus | 10.88 | 45.98 |
| CDY54326 | Canola | cytosol | 8.43 | 40.61 |
| CDY36325 | Canola | nucleus, plastid, vacuole | 22.3 | 20.72 |
| CDY36309 | Canola | cytosol, nucleus, plastid | 21.94 | 20.49 |
| CDY00750 | Canola | nucleus | 17.95 | 14.79 |
| CDX73841 | Canola | nucleus, plastid | 17.95 | 14.77 |
| CDY08477 | Canola | nucleus | 17.41 | 14.12 |
| CDY01074 | Canola | nucleus | 17.23 | 13.98 |
Protein Annotations
| MapMan:14.6.1.3.1 | MapMan:19.2.2.8.3.2 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.2 | Gene3D:3.30.980.30 | GO:A0A078J1I2 |
| UniProt:A0A078J1I2 | EnsemblPlants:CDY57060 | ProteinID:CDY57060 | ProteinID:CDY57060.1 | InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil |
| InterPro:DDB1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00020463001 | InterPro:IPR015943 |
| PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF3 | InterPro:Quinoprotein_ADH-like_supfam | SUPFAM:SSF50998 |
| UniParc:UPI0004EE62CC | InterPro:WD40/YVTN_repeat-like_dom_sf | : | : | : | : |
Description
BnaC03g64410DBnaC03g64410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1I2]
Coordinates
chrLK033544:+:4060..10289
Molecular Weight (calculated)
122822.0 Da
IEP (calculated)
4.859
GRAVY (calculated)
-0.099
Length
1103 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSVWNYVVTA QKPSSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QAILDVPLYG RIATLELFRP HVSIVSLMPT SFISESGETQ DFLFIATEGY
0101: KFCVLQWDSD SSELITRAMG DVSDRIGRQT DNGQIGIIDP DCRFIGLHLY DGLFKVVPFD NKGQLKEAYN IRLEELQVLD IKFLYGCAKP TIAVLYQDNK
0201: DARHVKTYEV SQKEKDFVEG PWSQNNLDNG ADLLIPVPSP LCGVLIIGEE TIVYCSANAL KAIPIRSSIT KAYGRVDVDG SRYLLGDHAG LIHLLVITHE
0301: KEKVTGLKIE LLGETSIAST ISYLDNAVVF IGSSYGDSQL IKLNMQPDAN GSYVEIIEQY VNLGPIVDFC VVDLERQGQG QVVTCSGAYK DGSLRIVRNG
0401: IGINEQASVE LPGIKGIWSL KSSIDDAFDT FLVVSFISET RILAMNIEDE LEDTEIEGFL SQVQTLYCHD AVYNQLVQIT SNSVRLVSST TRELRNKWDA
0501: PAGFTVNVAT ANASQVLLAT GGGHLVYIEI GDGTLTEVKH AQLEYEVSCL DINPTGDNPN YSQLAAVGMW TDISVRIFVL PDLTLITKEQ LGGEIIPRSV
0601: LLCAFEGISY LLCALGDGHL LNFQLDTSTG ELRDRKKVSL GTQPITLRTF SSKSATHVFA ASDRPSVIYS NNKKLIYSNV NLKEVSHMCP FNSGAFPDSL
0701: AIAREGELTI GTIDEIQKLH IRTIPIGEHA RRICHQEQTR TFAICSLRNQ PSAEESEMHF VRLLDDRDFE FLATYPLDAF EYGCSILSGS FTDDKNVYYC
0801: VGTSYVLPEE NEPTKGRILV FVVEEGKLQL VAEKETKGSV YSLNAFNGKL LAAINQKIQL YKWTLRDDGT RELQSECGHH GHILALYVQT RGDFIVVGDL
0901: MKSISLLIYK HEEGAIEEIA RDYNASWMTA VGILDDDTYL GADNCYNLFT VKRHSEAATD EERCRMEVVG EYHIGEFVNR FRHGSLVTRL LDSETSQIPT
1001: MIFGTVNGVI GVMASLPQEQ YAFLEKLQTS MRKVIKGVGG LSHEQWRSFK NEKRSADARS FLDGDLIESF MDLSRRKMEE ISKGMDVQVE ELCKRVEELT
1101: RLH
0101: KFCVLQWDSD SSELITRAMG DVSDRIGRQT DNGQIGIIDP DCRFIGLHLY DGLFKVVPFD NKGQLKEAYN IRLEELQVLD IKFLYGCAKP TIAVLYQDNK
0201: DARHVKTYEV SQKEKDFVEG PWSQNNLDNG ADLLIPVPSP LCGVLIIGEE TIVYCSANAL KAIPIRSSIT KAYGRVDVDG SRYLLGDHAG LIHLLVITHE
0301: KEKVTGLKIE LLGETSIAST ISYLDNAVVF IGSSYGDSQL IKLNMQPDAN GSYVEIIEQY VNLGPIVDFC VVDLERQGQG QVVTCSGAYK DGSLRIVRNG
0401: IGINEQASVE LPGIKGIWSL KSSIDDAFDT FLVVSFISET RILAMNIEDE LEDTEIEGFL SQVQTLYCHD AVYNQLVQIT SNSVRLVSST TRELRNKWDA
0501: PAGFTVNVAT ANASQVLLAT GGGHLVYIEI GDGTLTEVKH AQLEYEVSCL DINPTGDNPN YSQLAAVGMW TDISVRIFVL PDLTLITKEQ LGGEIIPRSV
0601: LLCAFEGISY LLCALGDGHL LNFQLDTSTG ELRDRKKVSL GTQPITLRTF SSKSATHVFA ASDRPSVIYS NNKKLIYSNV NLKEVSHMCP FNSGAFPDSL
0701: AIAREGELTI GTIDEIQKLH IRTIPIGEHA RRICHQEQTR TFAICSLRNQ PSAEESEMHF VRLLDDRDFE FLATYPLDAF EYGCSILSGS FTDDKNVYYC
0801: VGTSYVLPEE NEPTKGRILV FVVEEGKLQL VAEKETKGSV YSLNAFNGKL LAAINQKIQL YKWTLRDDGT RELQSECGHH GHILALYVQT RGDFIVVGDL
0901: MKSISLLIYK HEEGAIEEIA RDYNASWMTA VGILDDDTYL GADNCYNLFT VKRHSEAATD EERCRMEVVG EYHIGEFVNR FRHGSLVTRL LDSETSQIPT
1001: MIFGTVNGVI GVMASLPQEQ YAFLEKLQTS MRKVIKGVGG LSHEQWRSFK NEKRSADARS FLDGDLIESF MDLSRRKMEE ISKGMDVQVE ELCKRVEELT
1101: RLH
0001: MSVWNYAVTA QKPTCVTHSC VGNFTSPQEL NLIVAKSTRI EIHLLSPQGL QTILDVPLYG RIATMELFRP HGEAQDFLFV ATERYKFCVL QWDYESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRVI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCTKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: NFVEGPWSQN NLDNGADLLI PVPSPLCGVL IIGEETIVYC SANAFKAIPI RPSITKAYGR VDLDGSRYLL GDHAGLIHLL VITHEKEKVT GLKIELLGET
0301: SIASSISYLD NAVVFVGSSY GDSQLIKLNL QPDAKGSYVE ILEKYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NIEDELEETE IEGFLSEVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR NKWDAPAGFS VNVATANASQ
0501: VLLATGGGHL VYLEIGDGTL TEVKHVLLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFVLPDLTL ITKEELGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQL DTSCGKLRDR KKVSLGTRPI TLRTFSSKSA THVFAASDRP AVIYSNNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP IGEHARRICH QEQTRTFAIS CLRNEPSAEE SESHFVRLLD AQSFEFLSSY PLDAFECGCS ILSCSFTDDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVEE GRLQLITEKE TKGAVYSLNA FNGKLLASIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI AVGDLMKSIS LLIYKHEEGA
0901: IEERARDYNA NWMTAVEILN DDIYLGTDNC FNIFTVKKNN EGATDEERAR MEVVGEYHIG EFVNRFRHGS LVMKLPDSDI GQIPTVIFGT VSGMIGVIAS
1001: LPQEQYAFLE KLQTSLRKVI KGVGGLSHEQ WRSFNNEKRT AEAKGYLDGD LIESFLDLSR GKMEEISKGM DVQVEELCKR VEELTRLH
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRVI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCTKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: NFVEGPWSQN NLDNGADLLI PVPSPLCGVL IIGEETIVYC SANAFKAIPI RPSITKAYGR VDLDGSRYLL GDHAGLIHLL VITHEKEKVT GLKIELLGET
0301: SIASSISYLD NAVVFVGSSY GDSQLIKLNL QPDAKGSYVE ILEKYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NIEDELEETE IEGFLSEVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR NKWDAPAGFS VNVATANASQ
0501: VLLATGGGHL VYLEIGDGTL TEVKHVLLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFVLPDLTL ITKEELGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQL DTSCGKLRDR KKVSLGTRPI TLRTFSSKSA THVFAASDRP AVIYSNNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP IGEHARRICH QEQTRTFAIS CLRNEPSAEE SESHFVRLLD AQSFEFLSSY PLDAFECGCS ILSCSFTDDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVEE GRLQLITEKE TKGAVYSLNA FNGKLLASIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI AVGDLMKSIS LLIYKHEEGA
0901: IEERARDYNA NWMTAVEILN DDIYLGTDNC FNIFTVKKNN EGATDEERAR MEVVGEYHIG EFVNRFRHGS LVMKLPDSDI GQIPTVIFGT VSGMIGVIAS
1001: LPQEQYAFLE KLQTSLRKVI KGVGGLSHEQ WRSFNNEKRT AEAKGYLDGD LIESFLDLSR GKMEEISKGM DVQVEELCKR VEELTRLH
Arabidopsis Description
DDB1BDNA damage-binding protein 1b [Source:UniProtKB/Swiss-Prot;Acc:O49552]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.