Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70585 | Canola | plastid | 65.6 | 92.39 |
| CDY69930 | Canola | plastid | 82.4 | 87.85 |
| HORVU7Hr1G056620.1 | Barley | cytosol | 15.4 | 65.81 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 32.0 | 50.63 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 94.2 | 43.25 |
| Solyc02g021650.2.1 | Tomato | nucleus | 92.0 | 42.01 |
| AT4G05420.1 | Thale cress | cytosol, nucleus, peroxisome | 91.4 | 42.0 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 90.8 | 41.8 |
| AT4G21100.1 | Thale cress | nucleus | 89.8 | 41.27 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 87.8 | 40.31 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 87.2 | 39.53 |
| CDX76416 | Canola | cytosol | 87.6 | 38.83 |
| KXG22678 | Sorghum | nucleus | 83.4 | 38.29 |
| Zm00001d039165_P046 | Maize | nucleus | 83.0 | 37.97 |
| TraesCS1D01G445700.1 | Wheat | unclear | 82.6 | 37.89 |
| TraesCSU01G002300.1 | Wheat | golgi, plastid | 82.6 | 37.89 |
| TraesCS1B01G473400.1 | Wheat | nucleus | 82.4 | 37.8 |
| HORVU1Hr1G094530.1 | Barley | nucleus, plastid | 81.6 | 35.66 |
| Zm00001d009745_P023 | Maize | cytosol, nucleus, plasma membrane, plastid | 77.2 | 35.12 |
| Bra020884.1-P | Field mustard | cytosol | 87.6 | 34.17 |
| TraesCS3A01G210100.2 | Wheat | nucleus | 68.0 | 31.28 |
| HORVU3Hr1G050820.11 | Barley | plastid | 68.4 | 30.21 |
| TraesCS3B01G240600.1 | Wheat | cytosol | 59.4 | 28.72 |
| CDY54326 | Canola | cytosol | 11.2 | 24.45 |
| KRH36214 | Soybean | nucleus | 22.6 | 9.31 |
| KRG92964 | Soybean | nucleus | 22.4 | 9.23 |
| KRH68075 | Soybean | nucleus, plastid | 21.0 | 7.57 |
| KRG96340 | Soybean | nucleus, plastid | 20.0 | 7.21 |
| KRH25071 | Soybean | nucleus | 6.8 | 5.7 |
| KRH59212 | Soybean | cytosol, nucleus | 1.6 | 1.5 |
| CDY69266 | Canola | nucleus | 0.0 | 0.0 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 0.0 | 0.0 |
| PGSC0003DMT400009595 | Potato | nucleus | 0.0 | 0.0 |
| KRH43086 | Soybean | nucleus | 0.0 | 0.0 |
| HORVU7Hr1G056610.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:19.2.2.8.3.2 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.2 | UniProt:A0A0R0JWW8 | EMBL:ACUP02003306 | ncoils:Coil |
| InterPro:DDB1 | EnsemblPlantsGene:GLYMA_05G1714001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| InterPro:IPR015943 | EnsemblPlants:KRH59213 | ProteinID:KRH59213 | ProteinID:KRH59213.1 | PFAM:PF10433 | PANTHER:PTHR10644 |
| PANTHER:PTHR10644:SF3 | UniParc:UPI0006EE0D43 | InterPro:WD40/YVTN_repeat-like_dom_sf | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr5:-:36161789..36169032
Molecular Weight (calculated)
55466.3 Da
IEP (calculated)
4.774
GRAVY (calculated)
-0.071
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIWNYVVTA HKPTNVTHSC VGNFTSPQDL NLIIAKCTRI EIHLLSPQGL QPMLDVPIYG RIATLELFRP HGEAQDYLFI ATERYKFCVL QWDSETGELV
101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCSKPTIVVL YQDNKDARHV KTYEVALKDK
201: DFVEGPWSQN NLDNGADLLI PVPPPLCGVL IIGEETIVYC SANAFKAIPI RPSITKAYGR VDPDGSRYLL GDHTGLVSLL VIIHEKEKVT GLKIEPLGET
301: SIASTISYLD NAFVYVGSSY GDSQLIKLNL QPDAKGSYVE VLERYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR VVRNGIGINE QASVELQGIK
401: GMWSLRSSTD DPFDTFLVVS FISETRILAM NLEDELEETE IEGFCSQVQT LFCHDAVHNQ LVQVTSSSVR LVSSTTRDLR NEWHAPSGYS VNVATANATQ
101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCSKPTIVVL YQDNKDARHV KTYEVALKDK
201: DFVEGPWSQN NLDNGADLLI PVPPPLCGVL IIGEETIVYC SANAFKAIPI RPSITKAYGR VDPDGSRYLL GDHTGLVSLL VIIHEKEKVT GLKIEPLGET
301: SIASTISYLD NAFVYVGSSY GDSQLIKLNL QPDAKGSYVE VLERYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR VVRNGIGINE QASVELQGIK
401: GMWSLRSSTD DPFDTFLVVS FISETRILAM NLEDELEETE IEGFCSQVQT LFCHDAVHNQ LVQVTSSSVR LVSSTTRDLR NEWHAPSGYS VNVATANATQ
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
Arabidopsis Description
DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.