CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92639
KRG98291
KRH01228
KRH11182
KRH18445
KRH21072
KRH21073
KRH25071
KRH30312
KRH34143
KRH42547
KRH43086
KRH44934
KRH58640
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15900.1	KRG92639	AT1G09770.1	17575050
AT4G15900.1	KRH34143	AT1G09770.1	17575050
AT4G15900.1	KRH01228	AT3G29160.1	10220464
AT4G15900.1	KRH18445	AT3G29160.1	10220464
AT4G15900.1	KRH44934	AT3G29160.1	10220464
AT4G15900.1	KRH25071	AT4G05420.1	18223036
AT4G15900.1	KRH43086	AT4G05420.1	18223036
AT4G15900.1	KRH59212	AT4G05420.1	18223036
AT4G15900.1	KRH59213	AT4G05420.1	18223036
AT4G15900.1	KRH11182	AT5G46210.1	18223036
AT4G15900.1	KRH21072	AT5G46210.1	18223036
AT4G15900.1	KRH21073	AT5G46210.1	18223036
AT4G15900.1	KRH42547	AT5G46210.1	18223036
AT4G15900.1	KRH58640	AT5G46210.1	18223036
AT4G15900.1	KRG98291	AT5G58720.1	10220464
AT4G15900.1	KRH30312	AT5G58720.1	10220464

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37088	Soybean	nucleus	98.53	98.32
GSMUA_Achr8P10200_001	Banana	cytosol	16.18	86.52
CDX72090	Canola	mitochondrion	60.29	85.93
VIT_05s0077g02310.t01	Wine grape	cytosol	85.29	83.88
GSMUA_Achr8P10210_001	Banana	cytosol	16.39	82.11
CDY27174	Canola	cytosol	26.26	81.7
Solyc01g094480.2.1	Tomato	nucleus	81.93	80.91
Bra012753.1-P	Field mustard	cytosol	80.46	79.63
CDY09730	Canola	cytosol	80.46	79.63
CDX90556	Canola	cytosol	80.25	79.42
AT4G15900.1	Thale cress	cytosol	79.62	77.98
PGSC0003DMT400023040	Potato	mitochondrion	49.16	76.22
Os03t0339100-01	Rice	nucleus	75.42	76.06
TraesCS3D01G181100.1	Wheat	cytosol	76.47	75.99
TraesCS3B01G205300.1	Wheat	cytosol	76.47	75.99
TraesCS3A01G175600.2	Wheat	plastid	76.05	75.73
CDY34965	Canola	cytosol	74.58	75.53
Bra007287.1-P	Field mustard	cytosol	63.45	75.5
KXG25821	Sorghum	cytosol	75.84	75.37
CDY28352	Canola	cytosol	74.79	74.63
Zm00001d033309_P003	Maize	cytosol	75.63	74.53
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	75.42	73.87
AT3G16650.1	Thale cress	cytosol	73.95	73.49
Bra021188.1-P	Field mustard	cytosol	74.58	71.43
CDY44171	Canola	cytosol	22.9	70.32
KRH55267	Soybean	cytosol	20.17	67.61
HORVU3Hr1G035450.7	Barley	mitochondrion	71.85	66.8
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	34.87	60.14
KRH21524	Soybean	cytosol	12.61	26.67
KRH71413	Soybean	nucleus	15.34	22.81
KRH32024	Soybean	cytosol	14.92	22.26
KRH59511	Soybean	cytosol, nucleus	13.45	21.33
KRH50874	Soybean	nucleus	14.08	20.36
KRH02239	Soybean	nucleus	14.08	20.24
KRH43376	Soybean	nucleus	13.03	19.31
KRG94875	Soybean	nucleus	13.87	19.13
KRH06660	Soybean	nucleus	13.66	18.84
KRH08668	Soybean	nucleus	18.28	18.12
KRH70275	Soybean	nucleus	17.65	17.5
KRH35009	Soybean	cytosol	4.62	15.94
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	13.03	15.86
KRH37298	Soybean	cytosol	12.61	15.83
KRH57171	Soybean	cytosol	13.87	12.84
KRH03886	Soybean	nucleus	13.45	12.45
KRH13395	Soybean	nucleus	16.81	11.2
KRH35010	Soybean	nucleus	3.78	11.18
KRH20750	Soybean	nucleus	16.6	11.03
KRH56498	Soybean	cytosol	15.76	9.88
KRG93160	Soybean	cytosol	15.76	9.88
KRH20528	Soybean	cytosol	15.97	9.77
KRH10790	Soybean	cytosol	16.6	9.58
KRH49977	Soybean	cytosol	11.13	7.74
KRH21526	Soybean	cytosol, peroxisome	3.78	3.01

Protein Annotations

EntrezGene:100775526	MapMan:16.4.5.1.3	Gene3D:2.130.10.10	UniProt:A0A0R0GAQ3	EMBL:ACUP02009262	InterPro:G-protein_beta_WD-40_rep
EnsemblPlantsGene:GLYMA_15G149300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH12069	ProteinID:KRH12069	ProteinID:KRH12069.1	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19923	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0001D1D909	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:12318980..12326151

Molecular Weight (calculated)

52558.3 Da

IEP (calculated)

9.305

GRAVY (calculated)

-0.508

Length

476 amino acids

Sequence
(BLAST)

001: MEVEPVEPQS LKKLSFKSLK RALDLFSPIH GHLAPPDAES KKIRTSHKVS VEYGGIKSTA NQPPHQVSSA TQDPGPSNTL ALPGPGDSKD SQKGGPQNAL
101: VVGPTMPSTT PNDTGFQSKS TAVVSASGSS ERNLSTSALM ERMPSKWPRP VWHAPWKNYR VISGHLGWVR SVAVDPSNTW FCTGSADRTI KIWDLASGVL
201: KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TIDVLLTGGR DSVCRVWDIR SKMQIHALSG HDNTVCSVFT
301: RPTDPQVVTG SHDTTIKMWD LRYGKTMSTL TNHKKSVRAM AQHPKEQAFA SASADNIKKF NLPKGEFLHN MLSQQKTIIN AMAVNEEGVM VTGGDNGSMW
401: FWDWKSGHNF QQSQTIVQPG SLDSEAGIYA CTYDLTGSRL ITCEADKTIK MWKEDESATP ETHPLNFRPP KDIRRF

Best Arabidopsis Sequence Match ( AT4G15900.1 )
(BLAST)

001: MPAPTTEIEP IEAQSLKKLS LKSLKRSLEL FSPVHGQFPP PDPEAKQIRL SHKMKVAFGG VEPVVSQPPR QPDRINEQPG PSNALSLAAP EGSKSTQKGA
101: TESAIVVGPT LLRPILPKGL NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP EWHAPWKNYR VIQGHLGWVR SVAFDPSNEW FCTGSADRTI
201: KIWDVATGVL KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TLDVLLTGGR DSVCRVWDIR TKMQIFALSG
301: HDNTVCSVFT RPTDPQVVTG SHDTTIKFWD LRYGKTMSTL THHKKSVRAM TLHPKENAFA SASADNTKKF SLPKGEFCHN MLSQQKTIIN AMAVNEDGVM
401: VTGGDNGSIW FWDWKSGHSF QQSETIVQPG SLESEAGIYA ACYDNTGSRL VTCEADKTIK MWKEDENATP ETHPINFKPP KEIRRF

Arabidopsis Description

PRL1Protein pleiotropic regulatory locus 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42384]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.