CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27174	Canola	cytosol	43.41	94.77
CDY44171	Canola	cytosol	34.13	73.55
Bra007287.1-P	Field mustard	cytosol	87.43	73.0
CDY34965	Canola	cytosol	93.71	66.6
CDY28352	Canola	cytosol	94.31	66.04
CDY09730	Canola	cytosol	90.42	62.79
CDX90556	Canola	cytosol	90.42	62.79
AT3G16650.1	Thale cress	cytosol	88.32	61.59
KRH12069	Soybean	nucleus	85.93	60.29
KRH37088	Soybean	nucleus	85.93	60.17
VIT_05s0077g02310.t01	Wine grape	cytosol	84.13	58.06
CDY08856	Canola	cytosol	19.76	22.22
CDX84544	Canola	cytosol	19.76	22.0
CDX86957	Canola	cytosol	18.56	19.87
CDY00226	Canola	cytosol, nucleus, plastid	18.56	19.68
CDX97287	Canola	cytosol	19.16	19.63
CDX91316	Canola	cytosol	19.16	19.63
CDX70436	Canola	plastid	9.58	19.16
CDY54233	Canola	golgi	10.18	18.28
CDY52843	Canola	nucleus	12.57	18.1
CDX67810	Canola	cytosol	18.26	16.99
CDY09645	Canola	cytosol	23.05	16.28
CDX77842	Canola	cytosol, nucleus, peroxisome	4.79	16.16
CDY08014	Canola	mitochondrion	4.79	15.69
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	14.67	15.36
CDX96156	Canola	cytosol	21.56	15.13
CDX84790	Canola	cytosol	21.56	15.13
CDY27046	Canola	cytosol	21.56	15.13
CDX79802	Canola	cytosol, golgi	18.56	14.94
CDY17912	Canola	cytosol, golgi	18.56	14.87
CDX72834	Canola	cytosol	17.66	14.82
CDX98931	Canola	nucleus	20.96	14.58
CDX96351	Canola	cytosol	17.37	14.54
CDX70097	Canola	cytosol	19.76	14.29
CDX98392	Canola	endoplasmic reticulum, extracellular	18.26	13.77
CDX68298	Canola	cytosol	15.57	13.37
CDY36678	Canola	cytosol	15.27	13.11
CDX70506	Canola	nucleus	20.06	10.65
CDX91118	Canola	nucleus	20.06	10.4
CDX85646	Canola	nucleus	19.76	10.2
CDX78524	Canola	nucleus	20.06	10.03
CDY05801	Canola	cytosol	14.97	9.96
CDY34658	Canola	mitochondrion	21.26	9.27
CDY05802	Canola	mitochondrion	14.97	8.7
CDX81101	Canola	cytosol	19.76	7.85
CDX88026	Canola	cytosol	19.46	7.84
CDY34846	Canola	nucleus	21.26	7.79
CDY60225	Canola	cytosol	19.16	7.66
CDX80363	Canola	cytosol	19.46	7.65
CDY52222	Canola	cytosol	22.46	6.68
CDY03812	Canola	cytosol	22.46	6.68
CDY15006	Canola	cytosol	18.86	6.21
CDY01533	Canola	plastid	1.2	2.53
CDY69403	Canola	nucleus	0.0	0.0

Protein Annotations

MapMan:16.4.5.1.3	Gene3D:2.130.10.10	EnsemblPlants:CDX72090	ProteinID:CDX72090	ProteinID:CDX72090.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00155890001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19923	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF166F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

BnaC08g27840D

Coordinates

chrLK031795:+:2362567..2363571

Molecular Weight (calculated)

37776.8 Da

IEP (calculated)

8.666

GRAVY (calculated)

-0.447

Length

334 amino acids

Sequence
(BLAST)

001: MPSRWPRPEW HAPWKNYRVI QGHLGWVRSV AFDPRNEWFC TGSADRTIKV WDVASGVLKL TLTGHIGQVR GLAVSNKDAY MFSAGDDKQV KCWDLEQNKV
101: IRSYHGHLSG VYCLALHPTL DVLLTGGRDS VCRVWDIRTK MRNFALSGHD KDVCSVFTRP TDPQVVTGSH DSTIKFWDLR YGRTMTTLTN HKKAVRAMAL
201: HPTENAFVSA SADNINKFIL PKGEFRHNML SQQRAIINAV AVNEDGVMVT GGDNGSLWFW DWKSGHSFQQ AEAIVQPGSL ESEAGIYAAC YDQTGSRLVT
301: CEADKTIKMW KEDENATPET HPLNFRPPKE IRRF

Best Arabidopsis Sequence Match ( AT4G15900.1 )
(BLAST)

001: MPAPTTEIEP IEAQSLKKLS LKSLKRSLEL FSPVHGQFPP PDPEAKQIRL SHKMKVAFGG VEPVVSQPPR QPDRINEQPG PSNALSLAAP EGSKSTQKGA
101: TESAIVVGPT LLRPILPKGL NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP EWHAPWKNYR VIQGHLGWVR SVAFDPSNEW FCTGSADRTI
201: KIWDVATGVL KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TLDVLLTGGR DSVCRVWDIR TKMQIFALSG
301: HDNTVCSVFT RPTDPQVVTG SHDTTIKFWD LRYGKTMSTL THHKKSVRAM TLHPKENAFA SASADNTKKF SLPKGEFCHN MLSQQKTIIN AMAVNEDGVM
401: VTGGDNGSIW FWDWKSGHSF QQSETIVQPG SLESEAGIYA ACYDNTGSRL VTCEADKTIK MWKEDENATP ETHPINFKPP KEIRRF

Arabidopsis Description

PRL1Protein pleiotropic regulatory locus 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42384]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.