Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003111.1-P | Field mustard | nucleus | 99.57 | 99.57 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 22.41 | 52.53 |
| CDY08014 | Canola | mitochondrion | 22.41 | 50.98 |
| CDX96156 | Canola | cytosol | 91.38 | 44.54 |
| CDY27046 | Canola | cytosol | 90.95 | 44.33 |
| CDX84790 | Canola | cytosol | 90.95 | 44.33 |
| VIT_13s0064g00360.t01 | Wine grape | nucleus | 73.71 | 35.85 |
| GSMUA_Achr3P29050_001 | Banana | nucleus | 73.71 | 35.77 |
| KRH70275 | Soybean | nucleus | 71.98 | 34.79 |
| CDX98931 | Canola | nucleus | 71.55 | 34.58 |
| KRH08668 | Soybean | nucleus | 71.55 | 34.58 |
| CDY09645 | Canola | cytosol | 70.26 | 34.46 |
| PGSC0003DMT400046634 | Potato | cytosol | 71.12 | 34.3 |
| Solyc03g112530.2.1 | Tomato | nucleus | 71.12 | 34.3 |
| CDX70097 | Canola | cytosol | 63.36 | 31.82 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 38.36 | 27.9 |
| CDX70436 | Canola | plastid | 15.95 | 22.16 |
| CDX86957 | Canola | cytosol | 21.12 | 15.71 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 21.12 | 15.56 |
| CDX91316 | Canola | cytosol | 19.4 | 13.8 |
| CDX97287 | Canola | cytosol | 19.4 | 13.8 |
| CDX72090 | Canola | mitochondrion | 18.1 | 12.57 |
| CDX84544 | Canola | cytosol | 15.52 | 12.0 |
| CDY08856 | Canola | cytosol | 15.09 | 11.78 |
| CDX67810 | Canola | cytosol | 18.1 | 11.7 |
| CDX79802 | Canola | cytosol, golgi | 18.1 | 10.12 |
| CDY17912 | Canola | cytosol, golgi | 18.1 | 10.07 |
| CDY34965 | Canola | cytosol | 19.83 | 9.79 |
| CDX96351 | Canola | cytosol | 16.81 | 9.77 |
| CDX90556 | Canola | cytosol | 20.26 | 9.77 |
| CDY09730 | Canola | cytosol | 20.26 | 9.77 |
| CDY36678 | Canola | cytosol | 15.95 | 9.51 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 17.67 | 9.26 |
| CDX68298 | Canola | cytosol | 15.52 | 9.25 |
| CDX72834 | Canola | cytosol | 15.52 | 9.05 |
| CDY28352 | Canola | cytosol | 18.53 | 9.01 |
| CDY54233 | Canola | golgi | 6.9 | 8.6 |
| CDY05801 | Canola | cytosol | 15.95 | 7.37 |
| VIT_13s0064g00330.t01 | Wine grape | extracellular | 3.88 | 6.87 |
| CDX70506 | Canola | nucleus | 17.67 | 6.52 |
| CDY05802 | Canola | mitochondrion | 15.95 | 6.43 |
| CDX91118 | Canola | nucleus | 17.67 | 6.37 |
| CDX85646 | Canola | nucleus | 17.67 | 6.34 |
| CDX78524 | Canola | nucleus | 18.1 | 6.29 |
| CDY34658 | Canola | mitochondrion | 15.09 | 4.57 |
| CDX88026 | Canola | cytosol | 15.95 | 4.46 |
| CDY60225 | Canola | cytosol | 15.95 | 4.43 |
| CDY01533 | Canola | plastid | 3.02 | 4.43 |
| CDX80363 | Canola | cytosol | 15.95 | 4.35 |
| CDX81101 | Canola | cytosol | 15.52 | 4.28 |
| CDY34846 | Canola | nucleus | 15.09 | 3.84 |
| CDY15006 | Canola | cytosol | 14.22 | 3.25 |
| CDY52222 | Canola | cytosol | 15.52 | 3.21 |
| CDY03812 | Canola | cytosol | 15.52 | 3.21 |
| CDY69403 | Canola | nucleus | 2.16 | 2.7 |
| CDY44171 | Canola | cytosol | 1.29 | 1.94 |
| CDY27174 | Canola | cytosol | 0.43 | 0.65 |
| Os01t0531300-00 | Rice | endoplasmic reticulum, extracellular | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.1.2.2.1.12 | Gene3D:2.130.10.10 | UniProt:A0A078IV10 | EnsemblPlants:CDY52843 | ProteinID:CDY52843 | ProteinID:CDY52843.1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00007994001 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19848 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EDCCD1 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : |
Description
BnaA10g28480DBnaA10g28480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV10]
Coordinates
chrLK033136:+:69639..70918
Molecular Weight (calculated)
25372.3 Da
IEP (calculated)
8.271
GRAVY (calculated)
-0.231
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: METASEAGMS NTVMCVLTDP EGTHLGSSMD IPQTAGPLQL TQLVNKFLNN QQQAVFRIRP VNRCSQTIAG HAEAVLCVSF SPDGKQLASV SGDTTVRLWD
101: LNTETPLFTC KGHKNWVLSI AWSPDGKHLV SGSKSGELCC WNPKKGELDG NPLTGRKKWI TGISWEPVHL SSPCRRFVTS SKDGDARIWD VTLKKSLICL
201: SGHTLAVTCV KWGGDGIIYT GCQMHSFNAY YR
101: LNTETPLFTC KGHKNWVLSI AWSPDGKHLV SGSKSGELCC WNPKKGELDG NPLTGRKKWI TGISWEPVHL SSPCRRFVTS SKDGDARIWD VTLKKSLICL
201: SGHTLAVTCV KWGGDGIIYT GCQMHSFNAY YR
001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG
Arabidopsis Description
NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.