CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003387.1-P	Field mustard	cytosol	92.76	99.11
KRH06660	Soybean	nucleus	81.34	84.64
KRG94875	Soybean	nucleus	81.06	84.35
Solyc03g059100.1.1	Tomato	nucleus	76.04	83.74
VIT_05s0094g00800.t01	Wine grape	cytosol	80.22	83.72
PGSC0003DMT400067694	Potato	cytosol	76.88	81.18
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	72.7	80.06
Zm00001d036709_P001	Maize	cytosol	72.42	79.75
GSMUA_Achr3P04370_001	Banana	cytosol	71.31	79.5
CDX98392	Canola	endoplasmic reticulum, extracellular	95.82	77.65
EER90141	Sorghum	plastid	73.26	76.68
TraesCS7B01G406900.1	Wheat	cytosol, plastid	72.98	75.72
TraesCS7A01G499900.1	Wheat	nucleus	72.7	75.43
Os06t0653800-01	Rice	nucleus	71.87	75.22
HORVU7Hr1G111780.2	Barley	cytosol, plastid	72.42	75.14
TraesCS7D01G486800.1	Wheat	cytosol, plastid	72.42	75.14
CDX79802	Canola	cytosol, golgi	84.96	73.49
CDY17912	Canola	cytosol, golgi	85.24	73.38
CDX86957	Canola	cytosol	25.07	28.85
CDX70436	Canola	plastid	13.37	28.74
CDY00226	Canola	cytosol, nucleus, plastid	24.51	27.94
CDX91316	Canola	cytosol	25.07	27.61
CDX97287	Canola	cytosol	25.07	27.61
CDX84544	Canola	cytosol	22.01	26.33
CDY08856	Canola	cytosol	21.73	26.26
CDY54233	Canola	golgi	11.7	22.58
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	16.43	18.5
CDX72090	Canola	mitochondrion	16.99	18.26
CDY52843	Canola	nucleus	11.7	18.1
CDY08014	Canola	mitochondrion	5.01	17.65
CDX96351	Canola	cytosol	19.5	17.54
CDX84790	Canola	cytosol	22.84	17.23
CDY27046	Canola	cytosol	22.84	17.23
CDX77842	Canola	cytosol, nucleus, peroxisome	4.74	17.17
CDX96156	Canola	cytosol	22.56	17.02
CDX72834	Canola	cytosol	18.66	16.83
CDY36678	Canola	cytosol	18.11	16.71
CDY09645	Canola	cytosol	22.01	16.7
CDX68298	Canola	cytosol	17.83	16.45
CDX98931	Canola	nucleus	20.61	15.42
CDY05801	Canola	cytosol	20.89	14.94
CDX70097	Canola	cytosol	18.94	14.72
CDY05802	Canola	mitochondrion	21.45	13.39
CDY34965	Canola	cytosol	17.27	13.19
CDX90556	Canola	cytosol	17.55	13.1
CDY09730	Canola	cytosol	17.55	13.1
CDY28352	Canola	cytosol	16.99	12.79
CDX91118	Canola	nucleus	20.61	11.49
CDX70506	Canola	nucleus	20.06	11.45
CDX85646	Canola	nucleus	20.33	11.28
CDX78524	Canola	nucleus	20.61	11.08
CDY44171	Canola	cytosol	4.74	10.97
CDY27174	Canola	cytosol	4.46	10.46
CDX88026	Canola	cytosol	21.17	9.17
CDX80363	Canola	cytosol	21.17	8.94
CDY34658	Canola	mitochondrion	18.94	8.88
CDY60225	Canola	cytosol	19.78	8.5
CDX81101	Canola	cytosol	19.78	8.44
CDY34846	Canola	nucleus	19.22	7.57
CDY52222	Canola	cytosol	20.61	6.6
CDY03812	Canola	cytosol	20.33	6.5
CDY15006	Canola	cytosol	17.83	6.31
CDY01533	Canola	plastid	1.95	4.43
CDY69403	Canola	nucleus	0.28	0.54

Protein Annotations

MapMan:16.4.1.4.3	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlants:CDX67810	ProteinID:CDX67810	ProteinID:CDX67810.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00099006001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44006	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF365F
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaA07g18500D

Coordinates

chrLK031787:-:2346331..2348022

Molecular Weight (calculated)

39891.5 Da

IEP (calculated)

7.594

GRAVY (calculated)

-0.413

Length

359 amino acids

Sequence
(BLAST)

001: MYTHPPVGRA NPYLYSPSHL QAKMDIVNRD NEPMEWSTVP YNAPQGPGSN GKQRTSSLEA PIMLLSGHQS AIYTMKFNPA GTVIASGSHD REIFLWRVHG
101: DCKNFMVLKG HKNAILDLHW TSDGLQIVSA SPDKTLRAWD VETGKQVKKM AEHSSFVNSC CPSRRGLPLI VSGSDDGTAK LWDLRQRGAV QTFPDKYQIT
201: AVSFSDAADK IFTGGVDNDV KVWDLRKGEA IMTLEGHQDT ITGMSLSPDG SYLLTNAMDC KLCVWDMRPY APQNRCVKIF EGHQHNFEKN LLKCAWSPDG
301: SKVTAGSADR MVHIWDTTSR RILYKLPGHN GSVNECVFHP HEPIIGSCSS DKLIYLGEI

Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)

001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI

Arabidopsis Description

At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.