Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34846 | Canola | nucleus | 94.78 | 79.61 |
| CDY54233 | Canola | golgi | 18.93 | 77.96 |
| AT1G11160.1 | Thale cress | cytosol | 81.85 | 61.41 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 38.38 | 56.43 |
| KRH20528 | Soybean | cytosol | 52.35 | 51.54 |
| KRH49977 | Soybean | cytosol | 43.99 | 49.2 |
| CDY15006 | Canola | cytosol | 63.97 | 48.32 |
| CDY52222 | Canola | cytosol | 70.37 | 48.04 |
| CDY03812 | Canola | cytosol | 69.84 | 47.64 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 18.41 | 41.59 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 41.78 | 38.65 |
| Os01t0780400-02 | Rice | cytosol | 42.17 | 38.54 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 41.78 | 38.51 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 41.51 | 38.27 |
| Solyc02g078800.2.1 | Tomato | extracellular | 51.31 | 38.19 |
| Zm00001d012620_P025 | Maize | cytosol | 41.51 | 38.13 |
| OQU87670 | Sorghum | cytosol | 41.25 | 37.98 |
| CDX88026 | Canola | cytosol | 40.99 | 37.88 |
| CDY60225 | Canola | cytosol | 40.99 | 37.6 |
| CDX81101 | Canola | cytosol | 40.99 | 37.34 |
| CDX80363 | Canola | cytosol | 40.73 | 36.71 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 44.39 | 35.12 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 42.3 | 33.58 |
| PGSC0003DMT400057760 | Potato | cytosol | 24.54 | 23.65 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 9.14 | 22.22 |
| CDX86957 | Canola | cytosol | 9.01 | 22.12 |
| CDX72090 | Canola | mitochondrion | 9.27 | 21.26 |
| CDX91316 | Canola | cytosol | 8.62 | 20.25 |
| CDY44171 | Canola | cytosol | 4.05 | 20.0 |
| CDX97287 | Canola | cytosol | 8.49 | 19.94 |
| CDY36678 | Canola | cytosol | 9.66 | 19.02 |
| CDX68298 | Canola | cytosol | 9.66 | 19.02 |
| CDX84544 | Canola | cytosol | 7.44 | 19.0 |
| CDY27174 | Canola | cytosol | 3.79 | 18.95 |
| CDX67810 | Canola | cytosol | 8.88 | 18.94 |
| CDY08856 | Canola | cytosol | 7.31 | 18.86 |
| CDX72834 | Canola | cytosol | 9.79 | 18.84 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 7.7 | 18.5 |
| CDX96351 | Canola | cytosol | 9.4 | 18.05 |
| CDX70436 | Canola | plastid | 3.79 | 17.37 |
| CDX79802 | Canola | cytosol, golgi | 8.88 | 16.39 |
| CDY17912 | Canola | cytosol, golgi | 8.88 | 16.31 |
| CDX90556 | Canola | cytosol | 10.18 | 16.22 |
| CDY09730 | Canola | cytosol | 10.18 | 16.22 |
| CDX84790 | Canola | cytosol | 9.92 | 15.97 |
| CDX96156 | Canola | cytosol | 9.92 | 15.97 |
| CDY27046 | Canola | cytosol | 9.92 | 15.97 |
| CDY09645 | Canola | cytosol | 9.79 | 15.86 |
| CDY34965 | Canola | cytosol | 9.66 | 15.74 |
| CDY28352 | Canola | cytosol | 9.79 | 15.72 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 8.88 | 15.35 |
| CDY52843 | Canola | nucleus | 4.57 | 15.09 |
| CDX98931 | Canola | nucleus | 9.14 | 14.58 |
| CDY05801 | Canola | cytosol | 9.53 | 14.54 |
| CDX91118 | Canola | nucleus | 12.14 | 14.44 |
| CDX70097 | Canola | cytosol | 8.62 | 14.29 |
| CDX70506 | Canola | nucleus | 11.62 | 14.15 |
| CDX85646 | Canola | nucleus | 11.75 | 13.91 |
| CDX78524 | Canola | nucleus | 11.75 | 13.47 |
| CDY05802 | Canola | mitochondrion | 9.79 | 13.04 |
| CDY08014 | Canola | mitochondrion | 1.44 | 10.78 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 1.31 | 10.1 |
| CDY01533 | Canola | plastid | 0.91 | 4.43 |
| CDY69403 | Canola | nucleus | 0.52 | 2.16 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | GO:A0A078HCY4 | UniProt:A0A078HCY4 | EnsemblPlants:CDY34658 | ProteinID:CDY34658 |
| ProteinID:CDY34658.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 |
| GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | EnsemblPlantsGene:GSBRNA2T00057116001 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 |
| PFAM:PF00400 | PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EEE12D | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : |
Description
BnaC08g42170DKatanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:A0A078HCY4]
Coordinates
chrLK032338:-:322690..327464
Molecular Weight (calculated)
84648.1 Da
IEP (calculated)
7.164
GRAVY (calculated)
-0.453
Length
766 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL LLTGGDDCKV NLWSIGKSTS LTSLCGHTSP IDSVTFNTEE ALVLAGASSG VIKLWNLQEA KVVRGFTGHI
101: SNCSALEFHP FGQYLASGSS DANLKIWDIR KKGCIQTYKG HTRGISTVKF TPDGRWLVSG GLDNVVKIWD ITAGKLLHEF KFHDGPIRSL DFHPLEFLLA
201: TGSADRTVKF WDLETFELIG STRPEATGVR SIAFHPDGQT LFCGLDDGLK VYSWEPVICR ESVDMGWSTL GDMCINENKF VGCSYYRNSV GIWVSDISKL
301: EPYGAGSEDE NECMVKRFSA LDEQASERMK SGSRGSSSPD YETKEIKNIY VDSIGGNLKA AIRKSEKQNA DDKSSRMHSV VDSDSGEESS HSRSESVASS
401: KTSPGMMLRP AHVRKTLAKF EESASVHSGT RKKSSQDVEE ETQTRNAEDS TIKGIMYKFE KALSSEPPTD EATRMLHKPP RVQRSSYNNN YNESRRAMSV
501: DSATSNDSKA EYSGDLPSGK NLCKTERVVS PEKPGDEQTI KVVSGRTRSL VERFERGEKI THTEEADNTN AVEQDPDKTS RQAGETPVTH VSSQTDSDIT
601: ENLMQTHEEF LSTLQSRLTK LQTVRHFWER SDVKGAIGAL RKLTDQSVQA DVISILTDKI EILTLDMFSQ LVPVLTSLLG SRTERPVNVS LDMLLKLVAV
701: FGTVIRSTVS APRIVGVDLH ADERIQICQV CSAGLHKIQR ILPILARRGG LITRKAQELN LVLQQT
101: SNCSALEFHP FGQYLASGSS DANLKIWDIR KKGCIQTYKG HTRGISTVKF TPDGRWLVSG GLDNVVKIWD ITAGKLLHEF KFHDGPIRSL DFHPLEFLLA
201: TGSADRTVKF WDLETFELIG STRPEATGVR SIAFHPDGQT LFCGLDDGLK VYSWEPVICR ESVDMGWSTL GDMCINENKF VGCSYYRNSV GIWVSDISKL
301: EPYGAGSEDE NECMVKRFSA LDEQASERMK SGSRGSSSPD YETKEIKNIY VDSIGGNLKA AIRKSEKQNA DDKSSRMHSV VDSDSGEESS HSRSESVASS
401: KTSPGMMLRP AHVRKTLAKF EESASVHSGT RKKSSQDVEE ETQTRNAEDS TIKGIMYKFE KALSSEPPTD EATRMLHKPP RVQRSSYNNN YNESRRAMSV
501: DSATSNDSKA EYSGDLPSGK NLCKTERVVS PEKPGDEQTI KVVSGRTRSL VERFERGEKI THTEEADNTN AVEQDPDKTS RQAGETPVTH VSSQTDSDIT
601: ENLMQTHEEF LSTLQSRLTK LQTVRHFWER SDVKGAIGAL RKLTDQSVQA DVISILTDKI EILTLDMFSQ LVPVLTSLLG SRTERPVNVS LDMLLKLVAV
701: FGTVIRSTVS APRIVGVDLH ADERIQICQV CSAGLHKIQR ILPILARRGG LITRKAQELN LVLQQT
0001: MAKRGYKLQE FVAHSGNVNC LSIGKKTSRL LLTGGDDYKV NLWSIGKTTS PMSLCGHTSP VDSVAFNSEE VLVLAGASSG VIKLWDLEES KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DTNLRVWDTR KKGCIQTYKG HTRGISTIEF SPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KCHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG TTRPEATGVR AIAFHPDGQT LFCGLDDGLK VYSWEPVICR DGVDMGWSTL GDFCINEGKF IGCSYYRNSV GIWVSDISEL
0301: EPYGAVSEDK NECMVKRFSV LNDQSERMGS GPRGSVSPDY ETREIKNIYV DSTGGNLNVA QNPGSLKATL PLESGKVATM VSEKQNAAYF GPAGDKYSST
0401: SRDSDSGEES SYSERESIPF SRTKSGMLLR PAHVRKTLAK FEESKQSAVV QSATRKKSGL AVEEEPQTQN AFLSEQNASK PFDAEDSIIK GITNKFEKAL
0501: SSEPPTDEAN RMFLKPPRIH RSSNSKYNDT RRAMSADPAT FGKGGMENSG DVEDIPSKTE RVLSREKPGD EQKNTEYPSG SRELNPVKIV EGVNVVSGRT
0601: RSLVEKFERG EKTTHTEGAS TTIEQNNNAV QEDPRKTSRQ TGETPVISTR RARSTPARVM PIVLNRDSNV TSDEPPLTQP ARTSSFPVMP VILNQASNVT
0701: YDEPSVALTQ ESRTSHARIL PVTFNQATNI TSEEASVTLR RQRRNSAARV RPVLLSQATS HECPVTSVRP LRTSPARVMP TKLNQSVNMT SDTSHIASMH
0801: RVSPTQMLAT PTVIDQVADM TLDETHATQI QPACDNMPQK EEPNISDRED DSDITENLML THNEFLSTLQ SRLTKLQIVR HFWERSDVKG AIGALRKLTD
0901: QSVQADVISI LTEKIEILTL DMFSQLVPVL TSLLGSRTER PVNVSLDMLL KLVAVFGTVI RSTVSAPRIV GVDLHANERL EICQICSAGL HKIQRILPVL
1001: ARRGGLITRK AQELNLVLQE P
0101: SNCSAVEFHP FGEFLASGSS DTNLRVWDTR KKGCIQTYKG HTRGISTIEF SPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KCHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG TTRPEATGVR AIAFHPDGQT LFCGLDDGLK VYSWEPVICR DGVDMGWSTL GDFCINEGKF IGCSYYRNSV GIWVSDISEL
0301: EPYGAVSEDK NECMVKRFSV LNDQSERMGS GPRGSVSPDY ETREIKNIYV DSTGGNLNVA QNPGSLKATL PLESGKVATM VSEKQNAAYF GPAGDKYSST
0401: SRDSDSGEES SYSERESIPF SRTKSGMLLR PAHVRKTLAK FEESKQSAVV QSATRKKSGL AVEEEPQTQN AFLSEQNASK PFDAEDSIIK GITNKFEKAL
0501: SSEPPTDEAN RMFLKPPRIH RSSNSKYNDT RRAMSADPAT FGKGGMENSG DVEDIPSKTE RVLSREKPGD EQKNTEYPSG SRELNPVKIV EGVNVVSGRT
0601: RSLVEKFERG EKTTHTEGAS TTIEQNNNAV QEDPRKTSRQ TGETPVISTR RARSTPARVM PIVLNRDSNV TSDEPPLTQP ARTSSFPVMP VILNQASNVT
0701: YDEPSVALTQ ESRTSHARIL PVTFNQATNI TSEEASVTLR RQRRNSAARV RPVLLSQATS HECPVTSVRP LRTSPARVMP TKLNQSVNMT SDTSHIASMH
0801: RVSPTQMLAT PTVIDQVADM TLDETHATQI QPACDNMPQK EEPNISDRED DSDITENLML THNEFLSTLQ SRLTKLQIVR HFWERSDVKG AIGALRKLTD
0901: QSVQADVISI LTEKIEILTL DMFSQLVPVL TSLLGSRTER PVNVSLDMLL KLVAVFGTVI RSTVSAPRIV GVDLHANERL EICQICSAGL HKIQRILPVL
1001: ARRGGLITRK AQELNLVLQE P
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4I7E1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.