Factsheet for VIT_00s0776g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1397g00010.t01	Wine grape	cytosol	61.61	94.69
KRH21524	Soybean	cytosol	38.77	89.78
CDY54233	Canola	golgi	22.84	63.98
KRH10790	Soybean	cytosol	69.29	43.76
CDY34658	Canola	mitochondrion	56.43	38.38
VIT_10s0071g01150.t01	Wine grape	cytosol	54.32	35.51
Solyc02g078800.2.1	Tomato	extracellular	65.45	33.14
CDY34846	Canola	nucleus	56.43	32.24
Os01t0780400-02	Rice	cytosol	51.63	32.1
TraesCS3D01G313800.1	Wheat	cytosol	50.86	32.0
Zm00001d012620_P025	Maize	cytosol	51.06	31.89
TraesCS3A01G317500.1	Wheat	cytosol	50.86	31.89
TraesCS3B01G349000.2	Wheat	cytosol	50.48	31.65
OQU87670	Sorghum	cytosol	50.29	31.49
AT1G11160.1	Thale cress	cytosol	60.08	30.66
GSMUA_Achr1P08830_001	Banana	cytosol	54.89	29.55
Bra031445.1-P	Field mustard	cytosol	61.61	28.61
CDY52222	Canola	cytosol	61.42	28.52
CDY03812	Canola	cytosol	61.42	28.5
AT1G61210.1	Thale cress	cytosol	64.11	28.28
CDY15006	Canola	cytosol	53.93	27.71
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	50.67	27.36
KRH21526	Soybean	cytosol, peroxisome	31.09	27.05
VIT_07s0151g00960.t01	Wine grape	cytosol	12.67	20.95
VIT_07s0205g00150.t01	Wine grape	cytosol	12.09	20.13
VIT_05s0094g00800.t01	Wine grape	cytosol	12.28	18.6
VIT_11s0016g02220.t01	Wine grape	cytosol	13.24	17.56
VIT_13s0064g00330.t01	Wine grape	extracellular	4.41	17.56
VIT_18s0164g00020.t01	Wine grape	nucleus	12.09	16.11
VIT_09s0002g01580.t01	Wine grape	cytosol	9.21	16.05
VIT_13s0064g00360.t01	Wine grape	nucleus	14.2	15.51
VIT_17s0000g09750.t01	Wine grape	cytosol	14.2	14.29
VIT_05s0077g02310.t01	Wine grape	cytosol	12.67	13.64
VIT_13s0019g00220.t01	Wine grape	nucleus	13.44	9.06
VIT_00s1406g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	4.8	8.47

Protein Annotations

EntrezGene:100261609	wikigene:100261609	MapMan:13.4.4.2.2	Gene3D:2.130.10.10	ProteinID:CCB61121	ProteinID:CCB61121.1
ncoils:Coil	UniProt:F6I2F4	EMBL:FN596568	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0008017	GO:GO:0008150	GO:GO:0008352	GO:GO:0009987	GO:GO:0016043	GO:GO:0051013
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:Katanin_bsu1	EntrezGene:LOC100261609	wikigene:LOC100261609
HAMAP:MF_03022	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19845	PANTHER:PTHR19845:SF5	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC61152	UniParc:UPI000210918E
ArrayExpress:VIT_00s0776g00020	EnsemblPlantsGene:VIT_00s0776g00020	EnsemblPlants:VIT_00s0776g00020.t01	unigene:Vvi.19008	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002266048	RefSeq:XP_002266048.2	:

Description

No Description!

Coordinates

chrUn:+:35275870..35289110

Molecular Weight (calculated)

57456.0 Da

IEP (calculated)

7.941

GRAVY (calculated)

-0.354

Length

521 amino acids

Sequence
(BLAST)

001: MAKRGYKLQE FVAHTTNVNC LNIGKKACRL LISGGDDHKV NLWAIGKPTS LMSLCGHTSP VESVTFDSAE VLVAAGASTG VIKLWDLEEA KMVRTLTGHR
101: SNCTAVEFHP FGEFFASGSL DTNLKVWDIR KKGCIHTYKG HTRGISTIRF TPDGRWVVSG GFDNVVKVWD LTAGKLLHDF KFHEGHIRSI DFHPLEFLLA
201: TGSADRTVKF WDLETFELIG SARPEATGVR SITFHPDGRT LFCGLDDSLK VYSWEPVVCH DAVDMGWSIL GDICIHEGKL LGCSYYRNSV GVWVADISKI
301: EPYGSGLLSK KNGCVERKFD LQESHSVEKV GSSVRSTSGF RSMSPDYDTK EIKNIYVDSS GGNSVASQKV RSFNTPKVLF PSDSKEITNL PTQKHSPGVG
401: LHAKTQGRAI TRSFVVPSIV TRDNSDGKDL ANSRRESITP ARANTGMSLK TSHIRRPSNS KYEAERLLMA VESGSFDSMP NDLDSAMKQN FHSRLVVDDE
501: ASESCEEKNS NISSVAEKFE K

Best Arabidopsis Sequence Match ( AT1G61210.1 )
(BLAST)

0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.