Factsheet for VIT_13s0019g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13395	Soybean	nucleus	74.26	80.39
KRH20750	Soybean	nucleus	72.32	78.07
Solyc08g067040.2.1	Tomato	nucleus	75.68	76.57
GSMUA_Achr4P29380_001	Banana	nucleus	67.79	73.7
Bra006202.1-P	Field mustard	nucleus	62.61	73.11
Bra023416.1-P	Field mustard	nucleus	60.8	72.64
AT5G13480.2	Thale cress	nucleus	61.45	72.3
EES04226	Sorghum	nucleus	63.26	68.49
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	63.39	68.25
TraesCS5A01G293600.2	Wheat	nucleus	60.8	66.1
TraesCS5B01G292800.1	Wheat	nucleus	60.93	66.06
TraesCS5D01G300900.1	Wheat	nucleus	60.93	66.06
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	62.23	63.88
CDY01533	Canola	plastid	12.03	58.86
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	20.31	55.48
VIT_07s0151g00960.t01	Wine grape	cytosol	9.57	23.49
VIT_07s0205g00150.t01	Wine grape	cytosol	9.31	23.0
VIT_05s0094g00800.t01	Wine grape	cytosol	9.06	20.35
VIT_09s0002g01580.t01	Wine grape	cytosol	7.76	20.07
VIT_13s0064g00330.t01	Wine grape	extracellular	3.23	19.08
VIT_18s0164g00020.t01	Wine grape	nucleus	9.06	17.9
VIT_11s0016g02220.t01	Wine grape	cytosol	8.67	17.05
VIT_13s0064g00360.t01	Wine grape	nucleus	10.48	16.98
VIT_05s0077g02310.t01	Wine grape	cytosol	10.09	16.12
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	9.06	13.44
VIT_17s0000g09750.t01	Wine grape	cytosol	8.28	12.36
VIT_10s0071g01150.t01	Wine grape	cytosol	11.64	11.29
VIT_00s1406g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	3.62	9.49
VIT_00s1397g00010.t01	Wine grape	cytosol	2.46	5.6

Protein Annotations

EntrezGene:100263567	wikigene:100263567	MapMan:16.2.1.2.7	Gene3D:2.130.10.10	ProteinID:CCB62299	ProteinID:CCB62299.1
UniProt:F6I5T1	EMBL:FN596752	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005847	GO:GO:0006139	GO:GO:0006378	GO:GO:0006379	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009908	GO:GO:0009909
GO:GO:0009987	GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100263567
wikigene:LOC100263567	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF81995	UniParc:UPI0001985F2C	ArrayExpress:VIT_13s0019g00220	EnsemblPlantsGene:VIT_13s0019g00220
EnsemblPlants:VIT_13s0019g00220.t01	unigene:Vvi.19440	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_002267704	RefSeq:XP_002267704.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr13_random:+:2360524..2387299

Molecular Weight (calculated)

85308.6 Da

IEP (calculated)

8.622

GRAVY (calculated)

-0.706

Length

773 amino acids

Sequence
(BLAST)

001: MMYGDPQQQM QQQQQMQQQQ QMHQQQQMHQ QQQQIHQQQQ MQQQQQGGDF HRGPLPPPPS QPQPPQSQLP PPPPMMRQPS ASSTNLAPEY HHPSAPPYDA
101: HADSFAAKRM RKLAQRRAVD YTSTVVRYMQ IRMWQRDSRD RTVLQPTPAA AIDLLPAVAY SDNPSTSFAA KFVHTSLNKN RCSINRVLWT PTGRRLITGS
201: QSGEFTLWNG QSFNFEMILQ AHDQAIRSMV WSHNENWMVT GDDGGSIKYW QNNMNNVKAN KSAHKESVRD LSFCRTDLKF CSCSDDTTVK VWDFARCQED
301: RSLSGHGWDV KSVDWHPTKS LLVSGGKDNL VKLWDAKTGR ELCSFHGHKN TVLCVKWNQN GNWVLTASKD QIIKLYDIRA MKELESFRGH RKDVTALAWH
401: PFHEDYFVSG SFDGSIFHWL VGHETPQVEI PGAHDNSVWD LAWHPIGYIL CSGSNDHTTK FWCRNRPGDT VRDKFNMGHN QGYGDQNPAL GGRMPGNFPV
501: PETPTTPGPF AAGLTRNEGT IPGVGVAMPL TIPSLDTSAQ GEQKQPLPVS IPLGAPPLPP GPHPSLLAAN QQQAYQQNPP QMPQHHQALP QQMPPLPLQP
601: PNMSQLQPPS HLPLLPHPHL PRPPQLPPMG MPSNIPSSMP GSLPMPSMPT SLPLQMPAPM GMQGAMNQMG PPMPQGHFMG MNPMHAGSLP TGGVPPPIGS
701: FQGGAQMYAP GGSFNRAPAG QMPMMPGLNP YQTGNPNPSG SGMGTLPSNM GHPSGMAPPP PPPGPPPHGQ PTQ

Best Arabidopsis Sequence Match ( AT5G13480.1 )
(BLAST)

001: MYAGGDMHRG SQMPQPPMMR QSSASSTNIN PDYHHPSGPF DPNVDSFGAK RMRKHTQRRA VDYTSTVVRY IQARTWQRDS RDRTTLQPTP AAAVDMLPTV
101: AYSDNPSTSF AAKFVHASLN KNRCSINRVL WTPSGRRLIT GSQSGEFTLW NGQSFNFEMI LQAHDQPIRS MVWSHNENYM VSGDDGGTLK YWQNNMNNVK
201: ANKTAHKESI RDLSFCKTDL KFCSCSDDTT VKVWDFTKCV DESSLTGHGW DVKSVDWHPT KSLLVSGGKD QLVKLWDTRS GRELCSLHGH KNIVLSVKWN
301: QNGNWLLTAS KDQIIKLYDI RTMKELQSFR GHTKDVTSLA WHPCHEEYFV SGSSDGSICH WIVGHENPQI EIPNAHDNSV WDLAWHPIGY LLCSGSNDHT
401: TKFWCRNRPA DNPRDVLMQN QGYNEQGFGR QPDNFQPSEA SPIPGAFVPG LTRNEGTIPG IGIAMPFDAS SQGDHKQPLP GSMALGAPPL PPGPHPSLLG
501: SGQQQGYQQQ QQHQGHPQQM LPMPNMPHHQ LPPSSHMPLH PHHLPRPMQM PPHGHMPPPS MPMSHQMPGS MGMQGGMNPQ MSQSHFMGAP SGVFQGQPNS
601: GGPQMYPQGR GGFNRPQMIP GYNNPFQQQQ QPPLPPGPPP NNNQQHQ

Arabidopsis Description

FYTransducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G13480]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.