Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH59511 | Soybean | cytosol, nucleus | 86.96 | 86.67 |
| GSMUA_Achr6P13100_001 | Banana | cytosol | 87.29 | 85.86 |
| Solyc11g005550.1.1 | Tomato | cytosol | 83.61 | 83.61 |
| PGSC0003DMT400010145 | Potato | cytosol | 83.28 | 83.28 |
| KRH43376 | Soybean | nucleus | 87.29 | 81.31 |
| AT5G64730.1 | Thale cress | cytosol | 80.94 | 80.94 |
| Bra024323.1-P | Field mustard | cytosol | 80.27 | 80.81 |
| CDY08856 | Canola | cytosol | 80.27 | 80.81 |
| CDX84544 | Canola | cytosol | 80.6 | 80.33 |
| Os02t0543400-01 | Rice | cytosol, mitochondrion | 75.92 | 75.42 |
| EES05216 | Sorghum | cytosol | 75.25 | 74.26 |
| Zm00001d050708_P002 | Maize | cytosol | 74.25 | 73.27 |
| TraesCS6B01G275200.2 | Wheat | cytosol | 73.24 | 73.0 |
| TraesCS6A01G250200.1 | Wheat | cytosol | 72.91 | 72.67 |
| TraesCS6D01G232000.1 | Wheat | cytosol | 72.91 | 72.67 |
| HORVU6Hr1G063000.1 | Barley | cytosol | 73.58 | 69.18 |
| HORVU0Hr1G027010.1 | Barley | plastid | 73.58 | 61.28 |
| VIT_07s0205g00150.t01 | Wine grape | cytosol | 28.09 | 26.84 |
| VIT_07s0151g00960.t01 | Wine grape | cytosol | 28.09 | 26.67 |
| VIT_05s0094g00800.t01 | Wine grape | cytosol | 23.08 | 20.06 |
| VIT_18s0164g00020.t01 | Wine grape | nucleus | 20.4 | 15.6 |
| VIT_11s0016g02220.t01 | Wine grape | cytosol | 19.73 | 15.01 |
| VIT_13s0064g00360.t01 | Wine grape | nucleus | 23.41 | 14.68 |
| VIT_17s0000g09750.t01 | Wine grape | cytosol | 25.08 | 14.48 |
| VIT_13s0064g00330.t01 | Wine grape | extracellular | 6.02 | 13.74 |
| VIT_05s0077g02310.t01 | Wine grape | cytosol | 21.4 | 13.22 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 16.05 | 9.21 |
| VIT_13s0019g00220.t01 | Wine grape | nucleus | 20.07 | 7.76 |
| VIT_10s0071g01150.t01 | Wine grape | cytosol | 18.39 | 6.9 |
| VIT_00s1406g00010.t01 | Wine grape | cytosol, mitochondrion, nucleus | 4.68 | 4.75 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 5.35 | 4.72 |
Protein Annotations
| EntrezGene:100254937 | wikigene:100254937 | Gene3D:2.130.10.10 | MapMan:35.1 | ProteinID:CBI35897 | ProteinID:CBI35897.3 |
| UniProt:D7TZV1 | EMBL:FN596494 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | EntrezGene:LOC100254937 | wikigene:LOC100254937 | PFAM:PF00400 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22847 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI00015C867B | ArrayExpress:VIT_09s0002g01580 | EnsemblPlantsGene:VIT_09s0002g01580 | EnsemblPlants:VIT_09s0002g01580.t01 | unigene:Vvi.18505 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_002274426 |
| RefSeq:XP_002274426.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:1372877..1380682
Molecular Weight (calculated)
33033.0 Da
IEP (calculated)
7.044
GRAVY (calculated)
-0.248
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIAGLPKKE ANVLRGHEGA VLAARFNGDG NYCLSCGKDR TIRLWNPHRG IHIKTYKSHG REVRDVHVAP DNSKLCSCGG DRQLFYWDVS TGRVIRKFRG
101: HDSEVNAVKF NEYASVVVSA GYDRSLRAWD CRSHSTEPIQ IIDTFSDSVM SVCLTKSEII AGSVDGTVRT FDIRIGRELS DDLGQPVNCI SMSNDANCIL
201: ASCLDSTLRL LDRSTGELLQ EYKGHTCKSY KMDCCLTNTD AHVTSGSEDG FIFFWDLVDA SVVSSFRAHA SVVTSVSYHP KDDCMITASV DGTIRVWKT
101: HDSEVNAVKF NEYASVVVSA GYDRSLRAWD CRSHSTEPIQ IIDTFSDSVM SVCLTKSEII AGSVDGTVRT FDIRIGRELS DDLGQPVNCI SMSNDANCIL
201: ASCLDSTLRL LDRSTGELLQ EYKGHTCKSY KMDCCLTNTD AHVTSGSEDG FIFFWDLVDA SVVSSFRAHA SVVTSVSYHP KDDCMITASV DGTIRVWKT
001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.